Strain Fitness in Shewanella oneidensis MR-1 around SO4542

Experiment: Ferric citrate electron acceptor; DNA cleaned with chelator

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferric citrate electron acceptor; DNA cleaned with chelator
4,738,243	+		SO4539	0.86	-0.9
4,738,305	-		SO4539	0.87	-2.4
4,738,340	+		SO4539	0.88	+0.3
4,738,356	-		SO4539	0.88	-3.2
4,738,405	-		SO4539	0.89	-1.0
4,738,412	-		SO4539	0.89	+0.7
4,738,465	+				-0.0
4,738,487	-				+1.3
4,738,555	+				-1.0
4,738,566	-				+1.0
4,738,566	-				-0.9
4,738,597	-				-1.0
4,738,597	-				-2.1
4,738,614	+				-0.2
4,738,659	+				+2.1
4,738,718	+				-0.8
4,738,780	-				+3.3
4,738,780	-				-1.7
4,738,780	-				+0.5
4,738,819	-				+0.1
4,738,854	+				-0.5
4,738,854	+				+0.7
4,738,862	-				-0.4
4,738,862	-				-1.6
4,738,873	-				+0.1
4,738,879	+				+0.0
4,738,912	+				+1.0
4,739,125	+				+0.0
4,739,321	+		SO4542	0.10	+0.3
4,739,321	+		SO4542	0.10	-0.6
4,739,349	+		SO4542	0.13	-2.7
4,739,521	+		SO4542	0.32	+0.5
4,739,527	+		SO4542	0.33	-1.5
4,739,555	-		SO4542	0.36	-0.7
4,739,602	+		SO4542	0.42	+1.1
4,739,609	+		SO4542	0.42	+1.6
4,739,618	-		SO4542	0.43	+2.0
4,739,628	-		SO4542	0.44	+1.1
4,739,650	-		SO4542	0.47	+0.3
4,739,663	+		SO4542	0.48	+0.0
4,739,663	+		SO4542	0.48	+1.1
4,739,744	+		SO4542	0.57	-0.6
4,739,747	-		SO4542	0.58	+1.6
4,739,755	+		SO4542	0.59	-0.1
4,739,763	-		SO4542	0.60	-0.5
4,739,763	-		SO4542	0.60	-0.2
4,739,784	-		SO4542	0.62	+0.9
4,739,791	+		SO4542	0.63	+1.0
4,739,793	-		SO4542	0.63	-2.7
4,739,837	+		SO4542	0.68	+0.3
4,739,838	+		SO4542	0.68	+0.7
4,739,879	+		SO4542	0.73	+0.6
4,739,879	+		SO4542	0.73	+0.5
4,739,879	+		SO4542	0.73	-1.5
4,739,887	-		SO4542	0.74	+0.2
4,739,914	+		SO4542	0.77	-0.2
4,739,914	+		SO4542	0.77	+0.2
4,739,914	+		SO4542	0.77	+0.2
4,739,927	+		SO4542	0.78	+0.6
4,739,933	-		SO4542	0.79	+1.0
4,739,962	+		SO4542	0.82	+1.5
4,739,962	+		SO4542	0.82	-1.2
4,739,962	+		SO4542	0.82	-0.8
4,739,970	+		SO4542	0.83	-1.5
4,739,976	-		SO4542	0.84	-1.6
4,740,016	+		SO4542	0.88	-1.1
4,740,022	-		SO4542	0.89	-2.0
4,740,024	-		SO4542	0.89	-0.3
4,740,024	-		SO4542	0.89	+1.8
4,740,024	-		SO4542	0.89	+0.7
4,740,029	+		SO4542	0.89	+0.5
4,740,060	+				+1.0
4,740,107	-				+0.4
4,740,116	+				-3.0
4,740,124	-				+0.7
4,740,124	-				-0.3
4,740,129	+				+0.6
4,740,137	-				-1.6
4,740,137	-				-0.1
4,740,137	-				+0.5
4,740,137	-				-0.2
4,740,141	+				+0.3
4,740,147	-				-2.1
4,740,147	-				+0.4
4,740,147	-				+1.5
4,740,210	+				-1.6
4,740,210	+				-1.5
4,740,241	-				-1.5
4,740,246	+				-0.1
4,740,257	+				-1.6
4,740,265	-				+0.5
4,740,298	-				+0.7
4,740,300	+				-0.2
4,740,300	+				-0.1
4,740,300	+				+0.2
4,740,300	+				-0.9
4,740,300	+				+1.3
4,740,300	+				+1.5
4,740,300	+				+3.4
4,740,300	+				+0.0
4,740,308	-				+0.2
4,740,308	-				+0.3
4,740,308	-				-0.4
4,740,308	-				+0.3
4,740,308	-				+0.4
4,740,308	-				+0.4
4,740,308	-				+0.8
4,740,309	+				-1.5
4,740,309	+				+0.2
4,740,309	+				+1.4
4,740,309	+				+0.3
4,740,314	+				+0.1
4,740,317	-				-0.5
4,740,317	-				+0.4
4,740,319	+				+0.5
4,740,322	+				+0.1
4,740,327	-				+1.1
4,740,387	+				-1.3
4,740,387	+				-1.2
4,740,387	+				+0.3
4,740,387	+				+0.4
4,740,390	-				+0.7
4,740,395	-				+0.8
4,740,395	-				+0.2
4,740,395	-				-0.3
4,740,401	-				+0.1
4,740,425	+				+0.2
4,740,433	-				+0.7
4,740,435	+				+0.5
4,740,435	+				+0.3
4,740,435	+				+2.5
4,740,435	+				+1.1
4,740,435	+				-0.1
4,740,435	+				-2.3
4,740,435	+				+1.2
4,740,435	+				-1.3
4,740,435	+				-2.3
4,740,435	+				+0.0
4,740,435	+				+0.2
4,740,435	+				-1.0
4,740,435	+				+0.3
4,740,435	+				-1.4
4,740,435	+				-0.1
4,740,435	+				+0.2
4,740,435	+				+0.1
4,740,435	+				+0.0
4,740,435	+				-0.6
4,740,443	-		SO4543	0.10	-0.4
4,740,443	-		SO4543	0.10	+1.1
4,740,443	-		SO4543	0.10	+0.3
4,740,443	-		SO4543	0.10	-1.0
4,740,443	-		SO4543	0.10	+0.1
4,740,443	-		SO4543	0.10	+1.7
4,740,443	-		SO4543	0.10	-0.1
4,740,443	-		SO4543	0.10	+0.8
4,740,443	-		SO4543	0.10	+0.3
4,740,443	-		SO4543	0.10	-1.2
4,740,443	-		SO4543	0.10	+0.1
4,740,443	-		SO4543	0.10	+1.0
4,740,443	-		SO4543	0.10	-0.4
4,740,443	-		SO4543	0.10	+0.1
4,740,443	-		SO4543	0.10	+0.7
4,740,443	-		SO4543	0.10	+0.5
4,740,443	-		SO4543	0.10	-0.7
4,740,443	-		SO4543	0.10	+0.3
4,740,443	-		SO4543	0.10	+0.6
4,740,443	-		SO4543	0.10	-0.6
4,740,443	-		SO4543	0.10	+0.1
4,740,443	-		SO4543	0.10	-0.8
4,740,443	-		SO4543	0.10	+0.7
4,740,443	-		SO4543	0.10	-1.3
4,740,443	-		SO4543	0.10	-0.5
4,740,445	+		SO4543	0.10	+0.5
4,740,445	+		SO4543	0.10	-0.1
4,740,445	+		SO4543	0.10	-1.0
4,740,445	+		SO4543	0.10	-1.6
4,740,445	+		SO4543	0.10	-2.6
4,740,445	+		SO4543	0.10	+0.1
4,740,453	-		SO4543	0.11	-1.9
4,740,453	-		SO4543	0.11	+0.4
4,740,453	-		SO4543	0.11	+0.3
4,740,453	-		SO4543	0.11	-1.0
4,740,453	-		SO4543	0.11	+0.6
4,740,465	+		SO4543	0.12	+0.2
4,740,500	+		SO4543	0.16	-1.1
4,740,500	+		SO4543	0.16	-2.7
4,740,500	+		SO4543	0.16	-2.4
4,740,523	+		SO4543	0.19	-0.1
4,740,523	+		SO4543	0.19	+1.6
4,740,523	+		SO4543	0.19	+1.4
4,740,523	+		SO4543	0.19	-2.5
4,740,523	+		SO4543	0.19	-0.1
4,740,523	+		SO4543	0.19	-0.2
4,740,523	+		SO4543	0.19	-2.2
4,740,526	-		SO4543	0.19	+0.7
4,740,531	-		SO4543	0.20	-2.0
4,740,531	-		SO4543	0.20	+0.5
4,740,531	-		SO4543	0.20	+1.0
4,740,531	-		SO4543	0.20	-0.2
4,740,532	-		SO4543	0.20	+0.2
4,740,536	+		SO4543	0.20	+0.2
4,740,538	+		SO4543	0.20	+0.1
4,740,538	+		SO4543	0.20	-0.6
4,740,538	+		SO4543	0.20	-4.8
4,740,538	+		SO4543	0.20	+0.2
4,740,538	+		SO4543	0.20	-2.6
4,740,546	-		SO4543	0.21	+0.3
4,740,546	-		SO4543	0.21	+0.4
4,740,546	-		SO4543	0.21	-1.0
4,740,546	-		SO4543	0.21	-0.7
4,740,559	-		SO4543	0.23	-1.9
4,740,560	-		SO4543	0.23	-0.9
4,740,598	-		SO4543	0.27	-2.0
4,740,613	+		SO4543	0.28	-1.0
4,740,692	+		SO4543	0.37	-0.2
4,740,700	-		SO4543	0.38	-0.3
4,740,727	+		SO4543	0.41	+0.8
4,740,737	+		SO4543	0.42	-3.9
4,740,737	+		SO4543	0.42	+0.9
4,740,741	+		SO4543	0.42	+0.5
4,740,787	-		SO4543	0.47	+0.6
4,740,796	+		SO4543	0.48	+1.3
4,740,796	+		SO4543	0.48	-0.1
4,740,796	+		SO4543	0.48	-0.7
4,740,796	+		SO4543	0.48	+0.4
4,740,796	+		SO4543	0.48	-1.0
4,740,804	-		SO4543	0.49	+0.7
4,740,804	-		SO4543	0.49	-2.2
4,740,804	-		SO4543	0.49	-2.6
4,740,804	-		SO4543	0.49	-4.2
4,740,804	-		SO4543	0.49	+1.6
4,740,804	-		SO4543	0.49	-0.0
4,740,814	-		SO4543	0.50	+1.4
4,740,841	+		SO4543	0.53	-0.5
4,740,856	+		SO4543	0.55	+0.3
4,740,856	+		SO4543	0.55	-0.2
4,740,864	-		SO4543	0.55	+0.7
4,740,864	-		SO4543	0.55	+0.9
4,740,864	-		SO4543	0.55	-1.1
4,740,864	-		SO4543	0.55	+0.5
4,740,864	-		SO4543	0.55	-0.3
4,740,864	-		SO4543	0.55	+0.5
4,740,866	+		SO4543	0.56	-0.4
4,740,866	+		SO4543	0.56	+0.5
4,740,866	+		SO4543	0.56	-0.4
4,740,875	+		SO4543	0.57	+0.1
4,740,881	+		SO4543	0.57	-3.0
4,740,881	+		SO4543	0.57	-0.0
4,740,881	+		SO4543	0.57	+0.6
4,740,881	+		SO4543	0.57	+0.8
4,740,889	-		SO4543	0.58	-0.5
4,740,889	-		SO4543	0.58	-0.6
4,740,889	-		SO4543	0.58	-0.9
4,740,889	-		SO4543	0.58	-2.1
4,740,889	-		SO4543	0.58	-1.8
4,740,905	+		SO4543	0.60	+0.1
4,740,905	+		SO4543	0.60	+0.0
4,740,906	-		SO4543	0.60	-1.1
4,740,936	-		SO4543	0.63	-1.4
4,740,981	-		SO4543	0.68	-1.0
4,740,981	-		SO4543	0.68	-0.2
4,740,987	+		SO4543	0.69	+0.4
4,740,995	-		SO4543	0.70	-1.3
4,741,014	+		SO4543	0.72	+1.5
4,741,014	+		SO4543	0.72	+1.2
4,741,022	-		SO4543	0.72	+1.6
4,741,022	-		SO4543	0.72	+0.2
4,741,022	-		SO4543	0.72	-1.5
4,741,022	-		SO4543	0.72	+0.7
4,741,022	-		SO4543	0.72	-2.4