Strain Fitness in Shewanella oneidensis MR-1 around SO0266

Experiment: Ferric citrate electron acceptor; DNA cleaned with chelator

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0265 and ccmF-1 are separated by 398 nucleotidesccmF-1 and dsbE are separated by 11 nucleotidesdsbE and ccmH overlap by 4 nucleotides SO0265: SO0265 - conserved hypothetical protein (NCBI ptt file), at 264,025 to 265,272 SO0265 SO0266: ccmF-1 - cytochrome c-type biogenesis protein CcmF (NCBI ptt file), at 265,671 to 267,650 ccmF-1 SO0267: dsbE - thiol:disulfide interchange protein DsbE (NCBI ptt file), at 267,662 to 268,216 dsbE SO0268: ccmH - cytochrome c-type biogenesis protein CcmH (NCBI ptt file), at 268,213 to 268,692 ccmH Position (kb) 265 266 267 268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 264.674 kb on - strand, within SO0265at 264.676 kb on + strand, within SO0265at 264.676 kb on + strand, within SO0265at 264.684 kb on - strand, within SO0265at 264.774 kb on - strand, within SO0265at 264.864 kb on - strand, within SO0265at 264.977 kb on - strand, within SO0265at 264.994 kb on - strand, within SO0265at 265.038 kb on - strand, within SO0265at 265.095 kb on - strand, within SO0265at 265.211 kb on + strandat 265.221 kb on + strandat 265.221 kb on + strandat 265.221 kb on + strandat 265.221 kb on + strandat 265.221 kb on + strandat 265.229 kb on - strandat 265.229 kb on - strandat 265.229 kb on - strandat 265.229 kb on - strandat 265.358 kb on - strandat 265.721 kb on - strandat 265.772 kb on - strandat 265.799 kb on - strandat 265.942 kb on + strand, within ccmF-1at 265.956 kb on + strand, within ccmF-1at 266.081 kb on - strand, within ccmF-1at 266.098 kb on + strand, within ccmF-1at 266.098 kb on + strand, within ccmF-1at 266.098 kb on + strand, within ccmF-1at 266.098 kb on + strand, within ccmF-1at 266.106 kb on - strand, within ccmF-1at 266.106 kb on - strand, within ccmF-1at 266.195 kb on - strand, within ccmF-1at 266.255 kb on - strand, within ccmF-1at 266.295 kb on + strand, within ccmF-1at 266.303 kb on - strand, within ccmF-1at 266.447 kb on - strand, within ccmF-1at 266.559 kb on + strand, within ccmF-1at 266.561 kb on + strand, within ccmF-1at 266.569 kb on - strand, within ccmF-1at 266.589 kb on + strand, within ccmF-1at 266.683 kb on + strand, within ccmF-1at 266.691 kb on - strand, within ccmF-1at 266.691 kb on - strand, within ccmF-1at 266.691 kb on - strand, within ccmF-1at 266.766 kb on - strand, within ccmF-1at 266.837 kb on + strand, within ccmF-1at 266.900 kb on + strand, within ccmF-1at 267.064 kb on + strand, within ccmF-1at 267.100 kb on - strand, within ccmF-1at 267.128 kb on - strand, within ccmF-1at 267.258 kb on + strand, within ccmF-1at 267.266 kb on - strand, within ccmF-1at 267.310 kb on - strand, within ccmF-1at 267.310 kb on - strand, within ccmF-1at 267.310 kb on - strand, within ccmF-1at 267.362 kb on + strand, within ccmF-1at 267.573 kb on + strandat 267.959 kb on - strand, within dsbEat 267.959 kb on - strand, within dsbEat 268.050 kb on + strand, within dsbEat 268.058 kb on - strand, within dsbEat 268.122 kb on + strand, within dsbEat 268.158 kb on + strand, within dsbEat 268.159 kb on + strand, within dsbEat 268.206 kb on + strandat 268.246 kb on + strandat 268.278 kb on + strand, within ccmHat 268.285 kb on + strand, within ccmHat 268.286 kb on - strand, within ccmHat 268.400 kb on - strand, within ccmHat 268.426 kb on + strand, within ccmHat 268.428 kb on + strand, within ccmHat 268.436 kb on - strand, within ccmHat 268.436 kb on - strand, within ccmHat 268.436 kb on - strand, within ccmHat 268.446 kb on + strand, within ccmHat 268.446 kb on + strand, within ccmHat 268.446 kb on + strand, within ccmHat 268.446 kb on + strand, within ccmHat 268.446 kb on + strand, within ccmHat 268.446 kb on + strand, within ccmHat 268.446 kb on + strand, within ccmHat 268.454 kb on - strand, within ccmHat 268.454 kb on - strand, within ccmHat 268.560 kb on - strand, within ccmHat 268.582 kb on - strand, within ccmHat 268.608 kb on + strand, within ccmH

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; DNA cleaned with chelator
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264,674 - SO0265 0.52 -1.3
264,676 + SO0265 0.52 -0.3
264,676 + SO0265 0.52 -0.0
264,684 - SO0265 0.53 -2.2
264,774 - SO0265 0.60 -0.3
264,864 - SO0265 0.67 -1.3
264,977 - SO0265 0.76 -3.2
264,994 - SO0265 0.78 -1.0
265,038 - SO0265 0.81 -1.1
265,095 - SO0265 0.86 -1.3
265,211 + -2.8
265,221 + -1.7
265,221 + -0.8
265,221 + -0.8
265,221 + -2.9
265,221 + +1.0
265,229 - -2.7
265,229 - -3.0
265,229 - -3.4
265,229 - -2.0
265,358 - -1.4
265,721 - -0.3
265,772 - +0.5
265,799 - -1.4
265,942 + ccmF-1 SO0266 0.14 -2.1
265,956 + ccmF-1 SO0266 0.14 -2.6
266,081 - ccmF-1 SO0266 0.21 -1.7
266,098 + ccmF-1 SO0266 0.22 -2.7
266,098 + ccmF-1 SO0266 0.22 -1.3
266,098 + ccmF-1 SO0266 0.22 -1.0
266,098 + ccmF-1 SO0266 0.22 -1.9
266,106 - ccmF-1 SO0266 0.22 -0.3
266,106 - ccmF-1 SO0266 0.22 -1.3
266,195 - ccmF-1 SO0266 0.26 -2.3
266,255 - ccmF-1 SO0266 0.29 -3.1
266,295 + ccmF-1 SO0266 0.32 -2.0
266,303 - ccmF-1 SO0266 0.32 -3.3
266,447 - ccmF-1 SO0266 0.39 -1.7
266,559 + ccmF-1 SO0266 0.45 -1.4
266,561 + ccmF-1 SO0266 0.45 -1.0
266,569 - ccmF-1 SO0266 0.45 -1.2
266,589 + ccmF-1 SO0266 0.46 -0.8
266,683 + ccmF-1 SO0266 0.51 -1.7
266,691 - ccmF-1 SO0266 0.52 -2.0
266,691 - ccmF-1 SO0266 0.52 -1.9
266,691 - ccmF-1 SO0266 0.52 -0.3
266,766 - ccmF-1 SO0266 0.55 +0.5
266,837 + ccmF-1 SO0266 0.59 -1.5
266,900 + ccmF-1 SO0266 0.62 -1.1
267,064 + ccmF-1 SO0266 0.70 -1.3
267,100 - ccmF-1 SO0266 0.72 -1.5
267,128 - ccmF-1 SO0266 0.74 -0.8
267,258 + ccmF-1 SO0266 0.80 -1.8
267,266 - ccmF-1 SO0266 0.81 -1.7
267,310 - ccmF-1 SO0266 0.83 -0.5
267,310 - ccmF-1 SO0266 0.83 -1.9
267,310 - ccmF-1 SO0266 0.83 -3.1
267,362 + ccmF-1 SO0266 0.85 -1.3
267,573 + -1.7
267,959 - dsbE SO0267 0.54 +0.0
267,959 - dsbE SO0267 0.54 -1.7
268,050 + dsbE SO0267 0.70 -3.1
268,058 - dsbE SO0267 0.71 +0.0
268,122 + dsbE SO0267 0.83 -1.7
268,158 + dsbE SO0267 0.89 +0.0
268,159 + dsbE SO0267 0.90 -1.3
268,206 + -4.2
268,246 + +0.0
268,278 + ccmH SO0268 0.14 -0.8
268,285 + ccmH SO0268 0.15 -2.2
268,286 - ccmH SO0268 0.15 -2.1
268,400 - ccmH SO0268 0.39 -0.5
268,426 + ccmH SO0268 0.44 -1.9
268,428 + ccmH SO0268 0.45 -2.0
268,436 - ccmH SO0268 0.46 -2.0
268,436 - ccmH SO0268 0.46 -1.0
268,436 - ccmH SO0268 0.46 -1.8
268,446 + ccmH SO0268 0.49 -1.9
268,446 + ccmH SO0268 0.49 -1.7
268,446 + ccmH SO0268 0.49 -2.6
268,446 + ccmH SO0268 0.49 -0.3
268,446 + ccmH SO0268 0.49 -2.0
268,446 + ccmH SO0268 0.49 -1.8
268,446 + ccmH SO0268 0.49 +2.0
268,454 - ccmH SO0268 0.50 -1.0
268,454 - ccmH SO0268 0.50 -1.0
268,560 - ccmH SO0268 0.72 -1.0
268,582 - ccmH SO0268 0.77 -2.9
268,608 + ccmH SO0268 0.82 -1.9

Or see this region's nucleotide sequence