Experiment: Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06780 and BWI76_RS06785 are separated by 142 nucleotides BWI76_RS06785 and BWI76_RS06790 are separated by 130 nucleotides BWI76_RS06790 and BWI76_RS06795 are separated by 36 nucleotides BWI76_RS06795 and BWI76_RS06800 are separated by 66 nucleotides BWI76_RS06800 and BWI76_RS06805 are separated by 14 nucleotides
BWI76_RS06780: BWI76_RS06780 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 1,422,012 to 1,423,205
_RS06780
BWI76_RS06785: BWI76_RS06785 - DNA-binding transcriptional repressor AcrR, at 1,423,348 to 1,423,998
_RS06785
BWI76_RS06790: BWI76_RS06790 - mechanosensitive channel MscK, at 1,424,129 to 1,427,470
_RS06790
BWI76_RS06795: BWI76_RS06795 - hypothetical protein, at 1,427,507 to 1,428,067
_RS06795
BWI76_RS06800: BWI76_RS06800 - DUF2496 domain-containing protein, at 1,428,134 to 1,428,307
_RS06800
BWI76_RS06805: BWI76_RS06805 - primosomal replication protein N'', at 1,428,322 to 1,428,849
_RS06805
Position (kb)
1424
1425
1426
1427
1428 Strain fitness (log2 ratio)
-2
-1
0
1 at 1423.140 kb on - strand at 1423.142 kb on + strand at 1423.161 kb on + strand at 1423.430 kb on + strand, within BWI76_RS06785 at 1423.562 kb on - strand, within BWI76_RS06785 at 1423.660 kb on + strand, within BWI76_RS06785 at 1423.786 kb on - strand, within BWI76_RS06785 at 1423.786 kb on - strand, within BWI76_RS06785 at 1423.906 kb on - strand, within BWI76_RS06785 at 1423.906 kb on - strand, within BWI76_RS06785 at 1423.916 kb on - strand, within BWI76_RS06785 at 1423.916 kb on - strand, within BWI76_RS06785 at 1423.976 kb on + strand at 1424.132 kb on - strand at 1424.132 kb on - strand at 1424.626 kb on + strand, within BWI76_RS06790 at 1424.780 kb on - strand, within BWI76_RS06790 at 1424.792 kb on - strand, within BWI76_RS06790 at 1424.951 kb on + strand, within BWI76_RS06790 at 1425.067 kb on + strand, within BWI76_RS06790 at 1425.231 kb on - strand, within BWI76_RS06790 at 1425.238 kb on + strand, within BWI76_RS06790 at 1425.246 kb on - strand, within BWI76_RS06790 at 1425.303 kb on - strand, within BWI76_RS06790 at 1425.305 kb on + strand, within BWI76_RS06790 at 1425.332 kb on + strand, within BWI76_RS06790 at 1425.374 kb on - strand, within BWI76_RS06790 at 1425.403 kb on - strand, within BWI76_RS06790 at 1425.412 kb on + strand, within BWI76_RS06790 at 1425.477 kb on - strand, within BWI76_RS06790 at 1425.516 kb on + strand, within BWI76_RS06790 at 1425.746 kb on - strand, within BWI76_RS06790 at 1425.781 kb on + strand, within BWI76_RS06790 at 1425.900 kb on - strand, within BWI76_RS06790 at 1426.252 kb on + strand, within BWI76_RS06790 at 1426.260 kb on - strand, within BWI76_RS06790 at 1426.356 kb on - strand, within BWI76_RS06790 at 1426.525 kb on + strand, within BWI76_RS06790 at 1426.575 kb on + strand, within BWI76_RS06790 at 1426.583 kb on - strand, within BWI76_RS06790 at 1426.583 kb on - strand, within BWI76_RS06790 at 1426.594 kb on - strand, within BWI76_RS06790 at 1426.865 kb on - strand, within BWI76_RS06790 at 1426.970 kb on + strand, within BWI76_RS06790 at 1427.027 kb on + strand, within BWI76_RS06790 at 1427.120 kb on - strand, within BWI76_RS06790 at 1427.169 kb on - strand at 1427.169 kb on - strand at 1427.176 kb on + strand at 1427.333 kb on + strand at 1427.341 kb on - strand at 1427.442 kb on - strand at 1427.707 kb on + strand, within BWI76_RS06795 at 1427.840 kb on + strand, within BWI76_RS06795 at 1427.848 kb on - strand, within BWI76_RS06795 at 1427.871 kb on + strand, within BWI76_RS06795 at 1427.879 kb on - strand, within BWI76_RS06795 at 1428.046 kb on + strand at 1428.274 kb on + strand, within BWI76_RS06800 at 1428.450 kb on - strand, within BWI76_RS06805
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL remove 1,423,140 - -2.1 1,423,142 + -0.2 1,423,161 + -0.6 1,423,430 + BWI76_RS06785 0.13 +0.9 1,423,562 - BWI76_RS06785 0.33 -0.3 1,423,660 + BWI76_RS06785 0.48 +0.1 1,423,786 - BWI76_RS06785 0.67 -0.0 1,423,786 - BWI76_RS06785 0.67 -0.4 1,423,906 - BWI76_RS06785 0.86 -0.6 1,423,906 - BWI76_RS06785 0.86 -0.6 1,423,916 - BWI76_RS06785 0.87 -1.6 1,423,916 - BWI76_RS06785 0.87 +0.6 1,423,976 + +0.6 1,424,132 - +0.8 1,424,132 - -0.9 1,424,626 + BWI76_RS06790 0.15 -2.0 1,424,780 - BWI76_RS06790 0.19 +0.8 1,424,792 - BWI76_RS06790 0.20 -0.7 1,424,951 + BWI76_RS06790 0.25 +0.8 1,425,067 + BWI76_RS06790 0.28 +0.7 1,425,231 - BWI76_RS06790 0.33 +1.1 1,425,238 + BWI76_RS06790 0.33 -0.0 1,425,246 - BWI76_RS06790 0.33 +0.4 1,425,303 - BWI76_RS06790 0.35 +0.8 1,425,305 + BWI76_RS06790 0.35 +0.4 1,425,332 + BWI76_RS06790 0.36 -0.6 1,425,374 - BWI76_RS06790 0.37 +0.6 1,425,403 - BWI76_RS06790 0.38 +1.0 1,425,412 + BWI76_RS06790 0.38 +0.4 1,425,477 - BWI76_RS06790 0.40 +0.9 1,425,516 + BWI76_RS06790 0.42 +0.3 1,425,746 - BWI76_RS06790 0.48 +1.4 1,425,781 + BWI76_RS06790 0.49 +0.3 1,425,900 - BWI76_RS06790 0.53 +0.2 1,426,252 + BWI76_RS06790 0.64 +0.1 1,426,260 - BWI76_RS06790 0.64 +1.0 1,426,356 - BWI76_RS06790 0.67 +0.8 1,426,525 + BWI76_RS06790 0.72 +0.5 1,426,575 + BWI76_RS06790 0.73 +1.2 1,426,583 - BWI76_RS06790 0.73 +1.7 1,426,583 - BWI76_RS06790 0.73 +0.5 1,426,594 - BWI76_RS06790 0.74 -0.3 1,426,865 - BWI76_RS06790 0.82 +0.2 1,426,970 + BWI76_RS06790 0.85 -0.1 1,427,027 + BWI76_RS06790 0.87 -1.8 1,427,120 - BWI76_RS06790 0.89 -0.3 1,427,169 - +0.1 1,427,169 - +1.3 1,427,176 + +0.4 1,427,333 + +0.0 1,427,341 - -0.7 1,427,442 - +0.7 1,427,707 + BWI76_RS06795 0.36 -0.8 1,427,840 + BWI76_RS06795 0.59 +0.9 1,427,848 - BWI76_RS06795 0.61 +0.9 1,427,871 + BWI76_RS06795 0.65 +0.2 1,427,879 - BWI76_RS06795 0.66 +0.4 1,428,046 + +0.2 1,428,274 + BWI76_RS06800 0.80 -0.2 1,428,450 - BWI76_RS06805 0.24 +0.2
Or see this region's nucleotide sequence