Experiment: Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04915 and BWI76_RS04920 are separated by 31 nucleotides BWI76_RS04920 and BWI76_RS04925 are separated by 14 nucleotides BWI76_RS04925 and BWI76_RS04930 are separated by 150 nucleotides
BWI76_RS04915: BWI76_RS04915 - hypothetical protein, at 1,032,223 to 1,032,585
_RS04915
BWI76_RS04920: BWI76_RS04920 - S-adenosylmethionine decarboxylase, at 1,032,617 to 1,033,411
_RS04920
BWI76_RS04925: BWI76_RS04925 - spermidine synthase, at 1,033,426 to 1,034,289
_RS04925
BWI76_RS04930: BWI76_RS04930 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,034,440 to 1,036,149
_RS04930
Position (kb) 1033
1034
1035 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1032.436 kb on + strand, within BWI76_RS04915 at 1032.587 kb on - strand at 1032.614 kb on + strand at 1032.614 kb on + strand at 1032.686 kb on - strand at 1032.736 kb on - strand, within BWI76_RS04920 at 1032.744 kb on - strand, within BWI76_RS04920 at 1032.809 kb on + strand, within BWI76_RS04920 at 1032.842 kb on + strand, within BWI76_RS04920 at 1032.927 kb on - strand, within BWI76_RS04920 at 1032.995 kb on + strand, within BWI76_RS04920 at 1033.156 kb on + strand, within BWI76_RS04920 at 1033.321 kb on + strand, within BWI76_RS04920 at 1033.428 kb on + strand at 1033.429 kb on - strand at 1033.450 kb on + strand at 1033.594 kb on + strand, within BWI76_RS04925 at 1033.602 kb on - strand, within BWI76_RS04925 at 1033.653 kb on + strand, within BWI76_RS04925 at 1033.717 kb on - strand, within BWI76_RS04925 at 1033.722 kb on - strand, within BWI76_RS04925 at 1033.874 kb on + strand, within BWI76_RS04925 at 1034.079 kb on + strand, within BWI76_RS04925 at 1034.087 kb on - strand, within BWI76_RS04925 at 1034.231 kb on + strand at 1034.278 kb on + strand at 1034.360 kb on - strand at 1034.431 kb on + strand at 1034.431 kb on - strand at 1034.431 kb on - strand at 1034.463 kb on + strand at 1034.474 kb on - strand at 1034.542 kb on + strand at 1034.638 kb on - strand, within BWI76_RS04930 at 1034.651 kb on + strand, within BWI76_RS04930 at 1034.659 kb on - strand, within BWI76_RS04930 at 1034.739 kb on - strand, within BWI76_RS04930 at 1034.795 kb on + strand, within BWI76_RS04930 at 1035.013 kb on + strand, within BWI76_RS04930 at 1035.013 kb on - strand, within BWI76_RS04930 at 1035.016 kb on - strand, within BWI76_RS04930 at 1035.024 kb on + strand, within BWI76_RS04930 at 1035.024 kb on + strand, within BWI76_RS04930 at 1035.024 kb on - strand, within BWI76_RS04930 at 1035.058 kb on - strand, within BWI76_RS04930 at 1035.154 kb on + strand, within BWI76_RS04930 at 1035.192 kb on + strand, within BWI76_RS04930 at 1035.195 kb on + strand, within BWI76_RS04930
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL remove 1,032,436 + BWI76_RS04915 0.59 -0.1 1,032,587 - -2.6 1,032,614 + -2.2 1,032,614 + -0.1 1,032,686 - +0.3 1,032,736 - BWI76_RS04920 0.15 +0.7 1,032,744 - BWI76_RS04920 0.16 -0.8 1,032,809 + BWI76_RS04920 0.24 -1.8 1,032,842 + BWI76_RS04920 0.28 +1.0 1,032,927 - BWI76_RS04920 0.39 -0.8 1,032,995 + BWI76_RS04920 0.48 -0.3 1,033,156 + BWI76_RS04920 0.68 +0.2 1,033,321 + BWI76_RS04920 0.89 -0.9 1,033,428 + -2.9 1,033,429 - -0.0 1,033,450 + -0.6 1,033,594 + BWI76_RS04925 0.19 -2.9 1,033,602 - BWI76_RS04925 0.20 -0.1 1,033,653 + BWI76_RS04925 0.26 +0.8 1,033,717 - BWI76_RS04925 0.34 -0.2 1,033,722 - BWI76_RS04925 0.34 -0.5 1,033,874 + BWI76_RS04925 0.52 -0.3 1,034,079 + BWI76_RS04925 0.76 -1.4 1,034,087 - BWI76_RS04925 0.77 -0.1 1,034,231 + -0.1 1,034,278 + -0.5 1,034,360 - -0.4 1,034,431 + -1.1 1,034,431 - -0.3 1,034,431 - -1.3 1,034,463 + -0.6 1,034,474 - +0.3 1,034,542 + +0.1 1,034,638 - BWI76_RS04930 0.12 +1.1 1,034,651 + BWI76_RS04930 0.12 -0.9 1,034,659 - BWI76_RS04930 0.13 +0.5 1,034,739 - BWI76_RS04930 0.17 +0.2 1,034,795 + BWI76_RS04930 0.21 -1.9 1,035,013 + BWI76_RS04930 0.34 -0.2 1,035,013 - BWI76_RS04930 0.34 +0.3 1,035,016 - BWI76_RS04930 0.34 -2.6 1,035,024 + BWI76_RS04930 0.34 +0.3 1,035,024 + BWI76_RS04930 0.34 -1.6 1,035,024 - BWI76_RS04930 0.34 +0.3 1,035,058 - BWI76_RS04930 0.36 -0.4 1,035,154 + BWI76_RS04930 0.42 -0.7 1,035,192 + BWI76_RS04930 0.44 -0.6 1,035,195 + BWI76_RS04930 0.44 -1.0
Or see this region's nucleotide sequence