Experiment: Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00825 and BWI76_RS00830 are separated by 151 nucleotides BWI76_RS00830 and BWI76_RS00835 are separated by 97 nucleotides BWI76_RS00835 and BWI76_RS00840 are separated by 254 nucleotides
BWI76_RS00825: BWI76_RS00825 - AraC family transcriptional regulator, at 168,919 to 169,782
_RS00825
BWI76_RS00830: BWI76_RS00830 - metal-binding protein ZinT, at 169,934 to 170,581
_RS00830
BWI76_RS00835: BWI76_RS00835 - phosphoenolpyruvate carboxylase, at 170,679 to 173,330
_RS00835
BWI76_RS00840: BWI76_RS00840 - acetylornithine deacetylase, at 173,585 to 174,736
_RS00840
Position (kb) 170
171
172
173
174 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 169.825 kb on + strand at 169.843 kb on - strand at 169.919 kb on + strand at 169.927 kb on - strand at 169.982 kb on - strand at 170.030 kb on - strand, within BWI76_RS00830 at 170.082 kb on - strand, within BWI76_RS00830 at 170.235 kb on - strand, within BWI76_RS00830 at 170.241 kb on + strand, within BWI76_RS00830 at 170.251 kb on + strand, within BWI76_RS00830 at 170.552 kb on - strand at 170.664 kb on - strand at 170.694 kb on - strand at 170.785 kb on + strand at 170.917 kb on - strand at 170.939 kb on + strand at 170.950 kb on + strand, within BWI76_RS00835 at 170.968 kb on - strand, within BWI76_RS00835 at 171.149 kb on - strand, within BWI76_RS00835 at 171.387 kb on - strand, within BWI76_RS00835 at 171.426 kb on + strand, within BWI76_RS00835 at 171.434 kb on - strand, within BWI76_RS00835 at 171.434 kb on - strand, within BWI76_RS00835 at 171.502 kb on - strand, within BWI76_RS00835 at 171.652 kb on + strand, within BWI76_RS00835 at 171.676 kb on + strand, within BWI76_RS00835 at 171.760 kb on + strand, within BWI76_RS00835 at 171.768 kb on - strand, within BWI76_RS00835 at 171.960 kb on + strand at 171.979 kb on - strand, within BWI76_RS00835 at 172.047 kb on + strand, within BWI76_RS00835 at 172.115 kb on + strand, within BWI76_RS00835 at 172.127 kb on + strand, within BWI76_RS00835 at 172.244 kb on - strand, within BWI76_RS00835 at 172.641 kb on + strand, within BWI76_RS00835 at 172.692 kb on - strand, within BWI76_RS00835 at 172.853 kb on + strand, within BWI76_RS00835 at 172.853 kb on + strand, within BWI76_RS00835 at 172.861 kb on - strand, within BWI76_RS00835 at 172.861 kb on - strand, within BWI76_RS00835 at 172.928 kb on + strand, within BWI76_RS00835 at 173.110 kb on - strand at 173.127 kb on - strand at 173.311 kb on + strand at 173.334 kb on + strand at 173.342 kb on - strand at 173.539 kb on + strand at 173.619 kb on - strand at 173.698 kb on - strand at 173.737 kb on + strand, within BWI76_RS00840 at 173.863 kb on + strand, within BWI76_RS00840 at 173.960 kb on - strand, within BWI76_RS00840 at 173.960 kb on - strand, within BWI76_RS00840 at 174.257 kb on + strand, within BWI76_RS00840
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL remove 169,825 + +0.2 169,843 - +0.7 169,919 + +0.4 169,927 - +0.1 169,982 - -0.1 170,030 - BWI76_RS00830 0.15 -1.7 170,082 - BWI76_RS00830 0.23 +0.4 170,235 - BWI76_RS00830 0.46 +0.2 170,241 + BWI76_RS00830 0.47 +0.2 170,251 + BWI76_RS00830 0.49 -0.1 170,552 - -1.1 170,664 - -0.6 170,694 - -0.9 170,785 + -2.2 170,917 - -2.3 170,939 + -5.5 170,950 + BWI76_RS00835 0.10 -4.5 170,968 - BWI76_RS00835 0.11 -4.4 171,149 - BWI76_RS00835 0.18 -5.2 171,387 - BWI76_RS00835 0.27 -1.6 171,426 + BWI76_RS00835 0.28 -4.0 171,434 - BWI76_RS00835 0.28 -3.3 171,434 - BWI76_RS00835 0.28 -0.5 171,502 - BWI76_RS00835 0.31 -4.2 171,652 + BWI76_RS00835 0.37 -2.0 171,676 + BWI76_RS00835 0.38 -3.5 171,760 + BWI76_RS00835 0.41 -1.2 171,768 - BWI76_RS00835 0.41 -4.5 171,960 + -2.7 171,979 - BWI76_RS00835 0.49 -1.5 172,047 + BWI76_RS00835 0.52 -4.8 172,115 + BWI76_RS00835 0.54 +0.1 172,127 + BWI76_RS00835 0.55 -5.1 172,244 - BWI76_RS00835 0.59 -0.5 172,641 + BWI76_RS00835 0.74 -0.9 172,692 - BWI76_RS00835 0.76 -2.8 172,853 + BWI76_RS00835 0.82 -4.7 172,853 + BWI76_RS00835 0.82 -4.8 172,861 - BWI76_RS00835 0.82 -5.8 172,861 - BWI76_RS00835 0.82 -1.7 172,928 + BWI76_RS00835 0.85 -3.2 173,110 - -4.6 173,127 - -1.8 173,311 + -2.4 173,334 + -4.2 173,342 - -1.7 173,539 + +1.5 173,619 - -0.0 173,698 - -0.5 173,737 + BWI76_RS00840 0.13 +1.1 173,863 + BWI76_RS00840 0.24 +0.1 173,960 - BWI76_RS00840 0.33 +0.5 173,960 - BWI76_RS00840 0.33 -0.3 174,257 + BWI76_RS00840 0.58 +0.6
Or see this region's nucleotide sequence