Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16885 and BWI76_RS16890 are separated by 33 nucleotides BWI76_RS16890 and BWI76_RS16895 are separated by 169 nucleotides BWI76_RS16895 and BWI76_RS16900 are separated by 74 nucleotides
BWI76_RS16885: BWI76_RS16885 - hypothetical protein, at 3,502,205 to 3,502,389
_RS16885
BWI76_RS16890: BWI76_RS16890 - hypothetical protein, at 3,502,423 to 3,503,157
_RS16890
BWI76_RS16895: BWI76_RS16895 - 3-(3-hydroxy-phenyl)propionate transporter MhpT, at 3,503,327 to 3,504,523
_RS16895
BWI76_RS16900: BWI76_RS16900 - 4-hydroxy-2-oxovalerate aldolase, at 3,504,598 to 3,505,614
_RS16900
Position (kb) 3503
3504
3505 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3502.434 kb on + strand at 3502.831 kb on - strand, within BWI76_RS16890 at 3504.087 kb on + strand, within BWI76_RS16895 at 3504.221 kb on + strand, within BWI76_RS16895 at 3504.460 kb on + strand at 3504.836 kb on + strand, within BWI76_RS16900 at 3505.512 kb on - strand, within BWI76_RS16900
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,502,434 + -0.1 3,502,831 - BWI76_RS16890 0.56 +0.1 3,504,087 + BWI76_RS16895 0.63 -3.3 3,504,221 + BWI76_RS16895 0.75 -2.2 3,504,460 + -0.1 3,504,836 + BWI76_RS16900 0.23 -0.1 3,505,512 - BWI76_RS16900 0.90 +0.8
Or see this region's nucleotide sequence