Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27740 and BWI76_RS27745 are separated by 294 nucleotides BWI76_RS27745 and BWI76_RS27750 are separated by 11 nucleotides
BWI76_RS27740: BWI76_RS27740 - LacI family transcriptional regulator, at 5,756,457 to 5,757,398
_RS27740
BWI76_RS27745: BWI76_RS27745 - PTS sugar transporter subunit IIB, at 5,757,693 to 5,758,004
_RS27745
BWI76_RS27750: BWI76_RS27750 - PTS lactose/cellobiose family transporter subunit IIC, at 5,758,016 to 5,759,341
_RS27750
Position (kb) 5757
5758
5759 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5756.702 kb on + strand, within BWI76_RS27740 at 5756.728 kb on + strand, within BWI76_RS27740 at 5756.873 kb on - strand, within BWI76_RS27740 at 5756.897 kb on + strand, within BWI76_RS27740 at 5756.897 kb on + strand, within BWI76_RS27740 at 5756.952 kb on - strand, within BWI76_RS27740 at 5756.960 kb on + strand, within BWI76_RS27740 at 5756.993 kb on + strand, within BWI76_RS27740 at 5756.993 kb on + strand, within BWI76_RS27740 at 5757.001 kb on - strand, within BWI76_RS27740 at 5757.066 kb on + strand, within BWI76_RS27740 at 5757.092 kb on - strand, within BWI76_RS27740 at 5757.105 kb on - strand, within BWI76_RS27740 at 5757.187 kb on + strand, within BWI76_RS27740 at 5757.338 kb on - strand at 5757.437 kb on - strand at 5757.598 kb on + strand at 5757.604 kb on - strand at 5757.700 kb on + strand at 5757.713 kb on - strand at 5757.776 kb on - strand, within BWI76_RS27745 at 5757.799 kb on - strand, within BWI76_RS27745 at 5757.903 kb on + strand, within BWI76_RS27745 at 5757.931 kb on + strand, within BWI76_RS27745 at 5757.938 kb on + strand, within BWI76_RS27745 at 5757.999 kb on + strand at 5758.015 kb on + strand at 5758.035 kb on - strand at 5758.067 kb on - strand at 5758.080 kb on + strand at 5758.238 kb on - strand, within BWI76_RS27750 at 5758.252 kb on + strand, within BWI76_RS27750 at 5758.310 kb on - strand, within BWI76_RS27750 at 5758.344 kb on + strand, within BWI76_RS27750 at 5758.353 kb on + strand, within BWI76_RS27750 at 5758.389 kb on + strand, within BWI76_RS27750 at 5758.434 kb on - strand, within BWI76_RS27750 at 5758.491 kb on - strand, within BWI76_RS27750 at 5758.553 kb on - strand, within BWI76_RS27750 at 5758.623 kb on - strand, within BWI76_RS27750 at 5758.630 kb on + strand, within BWI76_RS27750 at 5758.666 kb on + strand, within BWI76_RS27750 at 5758.707 kb on - strand, within BWI76_RS27750 at 5758.797 kb on - strand, within BWI76_RS27750 at 5758.854 kb on - strand, within BWI76_RS27750
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 5,756,702 + BWI76_RS27740 0.26 +1.2 5,756,728 + BWI76_RS27740 0.29 +0.3 5,756,873 - BWI76_RS27740 0.44 +0.3 5,756,897 + BWI76_RS27740 0.47 +1.2 5,756,897 + BWI76_RS27740 0.47 +0.5 5,756,952 - BWI76_RS27740 0.53 -0.2 5,756,960 + BWI76_RS27740 0.53 -1.8 5,756,993 + BWI76_RS27740 0.57 +0.5 5,756,993 + BWI76_RS27740 0.57 +1.2 5,757,001 - BWI76_RS27740 0.58 +0.9 5,757,066 + BWI76_RS27740 0.65 +1.2 5,757,092 - BWI76_RS27740 0.67 +0.4 5,757,105 - BWI76_RS27740 0.69 +0.3 5,757,187 + BWI76_RS27740 0.77 +0.1 5,757,338 - +0.8 5,757,437 - -0.7 5,757,598 + -0.7 5,757,604 - -0.7 5,757,700 + -0.2 5,757,713 - -0.2 5,757,776 - BWI76_RS27745 0.27 -0.8 5,757,799 - BWI76_RS27745 0.34 -1.1 5,757,903 + BWI76_RS27745 0.67 -0.8 5,757,931 + BWI76_RS27745 0.76 -2.2 5,757,938 + BWI76_RS27745 0.79 -0.8 5,757,999 + +1.7 5,758,015 + -0.4 5,758,035 - +0.8 5,758,067 - -1.2 5,758,080 + -1.8 5,758,238 - BWI76_RS27750 0.17 +0.5 5,758,252 + BWI76_RS27750 0.18 +0.2 5,758,310 - BWI76_RS27750 0.22 +0.5 5,758,344 + BWI76_RS27750 0.25 -1.0 5,758,353 + BWI76_RS27750 0.25 -0.4 5,758,389 + BWI76_RS27750 0.28 -3.3 5,758,434 - BWI76_RS27750 0.32 +0.2 5,758,491 - BWI76_RS27750 0.36 -3.2 5,758,553 - BWI76_RS27750 0.40 +0.4 5,758,623 - BWI76_RS27750 0.46 -0.4 5,758,630 + BWI76_RS27750 0.46 +0.9 5,758,666 + BWI76_RS27750 0.49 -0.4 5,758,707 - BWI76_RS27750 0.52 +0.6 5,758,797 - BWI76_RS27750 0.59 -1.3 5,758,854 - BWI76_RS27750 0.63 -0.8
Or see this region's nucleotide sequence