Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19955

Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19945 and BWI76_RS19950 overlap by 1 nucleotidesBWI76_RS19950 and BWI76_RS19955 are separated by 71 nucleotidesBWI76_RS19955 and BWI76_RS19960 are separated by 9 nucleotides BWI76_RS19945: BWI76_RS19945 - ribonucleotide-diphosphate reductase subunit beta, at 4,177,575 to 4,178,705 _RS19945 BWI76_RS19950: BWI76_RS19950 - (2Fe-2S) ferredoxin, at 4,178,705 to 4,178,959 _RS19950 BWI76_RS19955: BWI76_RS19955 - glycerophosphoryl diester phosphodiesterase, at 4,179,031 to 4,180,101 _RS19955 BWI76_RS19960: BWI76_RS19960 - MFS transporter, at 4,180,111 to 4,181,457 _RS19960 Position (kb) 4179 4180 4181Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4179.269 kb on - strand, within BWI76_RS19955at 4179.346 kb on - strand, within BWI76_RS19955at 4179.401 kb on + strand, within BWI76_RS19955at 4179.409 kb on - strand, within BWI76_RS19955at 4179.461 kb on + strand, within BWI76_RS19955at 4179.562 kb on - strand, within BWI76_RS19955at 4179.678 kb on - strand, within BWI76_RS19955at 4180.070 kb on + strandat 4180.636 kb on + strand, within BWI76_RS19960at 4180.880 kb on + strand, within BWI76_RS19960at 4180.972 kb on + strand, within BWI76_RS19960at 4180.980 kb on - strand, within BWI76_RS19960

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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4,179,269 - BWI76_RS19955 0.22 +0.4
4,179,346 - BWI76_RS19955 0.29 -0.4
4,179,401 + BWI76_RS19955 0.35 +0.5
4,179,409 - BWI76_RS19955 0.35 +0.6
4,179,461 + BWI76_RS19955 0.40 +2.8
4,179,562 - BWI76_RS19955 0.50 +1.0
4,179,678 - BWI76_RS19955 0.60 +0.5
4,180,070 + -1.3
4,180,636 + BWI76_RS19960 0.39 +0.7
4,180,880 + BWI76_RS19960 0.57 -2.0
4,180,972 + BWI76_RS19960 0.64 +0.0
4,180,980 - BWI76_RS19960 0.65 +0.0

Or see this region's nucleotide sequence