Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18925 and BWI76_RS18930 overlap by 4 nucleotides BWI76_RS18930 and BWI76_RS18935 overlap by 4 nucleotides
BWI76_RS18925: BWI76_RS18925 - histidinol dehydrogenase, at 3,925,538 to 3,926,842
_RS18925
BWI76_RS18930: BWI76_RS18930 - histidinol-phosphate transaminase, at 3,926,839 to 3,927,900
_RS18930
BWI76_RS18935: BWI76_RS18935 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 3,927,897 to 3,928,964
_RS18935
Position (kb)
3926
3927
3928 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3925.961 kb on + strand at 3925.969 kb on - strand, within BWI76_RS18925 at 3926.059 kb on + strand, within BWI76_RS18925 at 3926.096 kb on + strand, within BWI76_RS18925 at 3926.508 kb on + strand, within BWI76_RS18925 at 3926.719 kb on - strand at 3926.802 kb on + strand at 3926.851 kb on + strand at 3926.960 kb on + strand, within BWI76_RS18930 at 3927.342 kb on + strand, within BWI76_RS18930 at 3927.645 kb on - strand, within BWI76_RS18930 at 3927.841 kb on + strand at 3928.350 kb on + strand, within BWI76_RS18935 at 3928.358 kb on - strand, within BWI76_RS18935 at 3928.547 kb on + strand, within BWI76_RS18935 at 3928.788 kb on + strand, within BWI76_RS18935 at 3928.813 kb on + strand, within BWI76_RS18935 at 3928.820 kb on - strand, within BWI76_RS18935 at 3928.839 kb on - strand, within BWI76_RS18935
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,925,961 + +1.5 3,925,969 - BWI76_RS18925 0.33 -0.6 3,926,059 + BWI76_RS18925 0.40 -1.1 3,926,096 + BWI76_RS18925 0.43 +0.0 3,926,508 + BWI76_RS18925 0.74 -0.4 3,926,719 - -3.4 3,926,802 + -1.2 3,926,851 + -4.1 3,926,960 + BWI76_RS18930 0.11 -4.7 3,927,342 + BWI76_RS18930 0.47 -0.5 3,927,645 - BWI76_RS18930 0.76 -1.4 3,927,841 + -2.3 3,928,350 + BWI76_RS18935 0.42 +0.2 3,928,358 - BWI76_RS18935 0.43 -1.6 3,928,547 + BWI76_RS18935 0.61 +0.0 3,928,788 + BWI76_RS18935 0.83 -1.8 3,928,813 + BWI76_RS18935 0.86 -2.1 3,928,820 - BWI76_RS18935 0.86 +0.0 3,928,839 - BWI76_RS18935 0.88 -1.8
Or see this region's nucleotide sequence