Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18110 and BWI76_RS18115 are separated by 125 nucleotides BWI76_RS18115 and BWI76_RS18120 are separated by 65 nucleotides
BWI76_RS18110: BWI76_RS18110 - transcriptional regulator HexR, at 3,763,718 to 3,764,587
_RS18110
BWI76_RS18115: BWI76_RS18115 - pyruvate kinase, at 3,764,713 to 3,766,155
_RS18115
BWI76_RS18120: BWI76_RS18120 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 3,766,221 to 3,767,195
_RS18120
Position (kb)
3764
3765
3766
3767 Strain fitness (log2 ratio)
-1
0
1
2 at 3763.874 kb on - strand, within BWI76_RS18110 at 3764.089 kb on + strand, within BWI76_RS18110 at 3764.255 kb on - strand, within BWI76_RS18110 at 3764.380 kb on + strand, within BWI76_RS18110 at 3764.521 kb on + strand at 3764.529 kb on - strand at 3764.541 kb on - strand at 3764.617 kb on - strand at 3764.817 kb on - strand at 3764.866 kb on + strand, within BWI76_RS18115 at 3764.874 kb on - strand, within BWI76_RS18115 at 3765.015 kb on - strand, within BWI76_RS18115 at 3765.580 kb on + strand, within BWI76_RS18115 at 3765.647 kb on - strand, within BWI76_RS18115 at 3765.827 kb on + strand, within BWI76_RS18115 at 3765.845 kb on - strand, within BWI76_RS18115 at 3765.845 kb on - strand, within BWI76_RS18115 at 3766.034 kb on + strand at 3766.249 kb on - strand at 3766.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,763,874 - BWI76_RS18110 0.18 -0.2 3,764,089 + BWI76_RS18110 0.43 -0.4 3,764,255 - BWI76_RS18110 0.62 +0.8 3,764,380 + BWI76_RS18110 0.76 +0.3 3,764,521 + -0.0 3,764,529 - -1.4 3,764,541 - +0.6 3,764,617 - +0.5 3,764,817 - +1.1 3,764,866 + BWI76_RS18115 0.11 +1.3 3,764,874 - BWI76_RS18115 0.11 +0.9 3,765,015 - BWI76_RS18115 0.21 +0.2 3,765,580 + BWI76_RS18115 0.60 -0.0 3,765,647 - BWI76_RS18115 0.65 +0.6 3,765,827 + BWI76_RS18115 0.77 -0.6 3,765,845 - BWI76_RS18115 0.78 +1.9 3,765,845 - BWI76_RS18115 0.78 +0.4 3,766,034 + -1.0 3,766,249 - +1.1 3,766,257 - -0.1
Or see this region's nucleotide sequence