Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16440 and BWI76_RS16445 are separated by 10 nucleotides BWI76_RS16445 and BWI76_RS16450 overlap by 1 nucleotides BWI76_RS16450 and BWI76_RS16455 overlap by 8 nucleotides BWI76_RS16455 and BWI76_RS16460 are separated by 59 nucleotides
BWI76_RS16440: BWI76_RS16440 - DUF1656 domain-containing protein, at 3,410,375 to 3,410,611
_RS16440
BWI76_RS16445: BWI76_RS16445 - auxiliary transporter membrane fusion protein, at 3,410,622 to 3,411,518
_RS16445
BWI76_RS16450: BWI76_RS16450 - fusaric acid resistance protein, at 3,411,518 to 3,413,542
_RS16450
BWI76_RS16455: BWI76_RS16455 - superoxide dismutase, at 3,413,535 to 3,414,056
_RS16455
BWI76_RS16460: BWI76_RS16460 - oxidoreductase, at 3,414,116 to 3,415,012
_RS16460
Position (kb) 3411
3412
3413
3414 Strain fitness (log2 ratio) -2
-1
0
1 at 3410.839 kb on - strand, within BWI76_RS16445 at 3411.160 kb on + strand, within BWI76_RS16445 at 3411.200 kb on - strand, within BWI76_RS16445 at 3411.515 kb on + strand at 3411.893 kb on + strand, within BWI76_RS16450 at 3411.893 kb on + strand, within BWI76_RS16450 at 3411.893 kb on + strand, within BWI76_RS16450 at 3411.901 kb on - strand, within BWI76_RS16450 at 3411.901 kb on - strand, within BWI76_RS16450 at 3412.190 kb on + strand, within BWI76_RS16450 at 3412.348 kb on - strand, within BWI76_RS16450 at 3412.638 kb on - strand, within BWI76_RS16450 at 3412.884 kb on + strand, within BWI76_RS16450 at 3413.343 kb on - strand at 3413.361 kb on + strand at 3413.382 kb on + strand at 3413.390 kb on - strand at 3413.729 kb on + strand, within BWI76_RS16455 at 3413.749 kb on + strand, within BWI76_RS16455 at 3414.262 kb on + strand, within BWI76_RS16460 at 3414.272 kb on - strand, within BWI76_RS16460
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,410,839 - BWI76_RS16445 0.24 +0.6 3,411,160 + BWI76_RS16445 0.60 +0.6 3,411,200 - BWI76_RS16445 0.64 -0.0 3,411,515 + +0.8 3,411,893 + BWI76_RS16450 0.19 -1.0 3,411,893 + BWI76_RS16450 0.19 +0.5 3,411,893 + BWI76_RS16450 0.19 -2.5 3,411,901 - BWI76_RS16450 0.19 -0.3 3,411,901 - BWI76_RS16450 0.19 +0.2 3,412,190 + BWI76_RS16450 0.33 +0.6 3,412,348 - BWI76_RS16450 0.41 +0.8 3,412,638 - BWI76_RS16450 0.55 +0.6 3,412,884 + BWI76_RS16450 0.67 +1.5 3,413,343 - +0.6 3,413,361 + +1.1 3,413,382 + +0.3 3,413,390 - +0.3 3,413,729 + BWI76_RS16455 0.37 +1.6 3,413,749 + BWI76_RS16455 0.41 +0.8 3,414,262 + BWI76_RS16460 0.16 +0.5 3,414,272 - BWI76_RS16460 0.17 +0.8
Or see this region's nucleotide sequence