Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16070 and BWI76_RS16075 are separated by 222 nucleotides BWI76_RS16075 and BWI76_RS16080 are separated by 107 nucleotides
BWI76_RS16070: BWI76_RS16070 - N-acetylmuramic acid 6-phosphate etherase, at 3,332,242 to 3,333,147
_RS16070
BWI76_RS16075: BWI76_RS16075 - oxidoreductase, at 3,333,370 to 3,334,110
_RS16075
BWI76_RS16080: BWI76_RS16080 - LysR family transcriptional regulator, at 3,334,218 to 3,335,114
_RS16080
Position (kb)
3333
3334
3335 Strain fitness (log2 ratio)
-2
-1
0
1 at 3332.387 kb on + strand, within BWI76_RS16070 at 3332.387 kb on + strand, within BWI76_RS16070 at 3332.387 kb on + strand, within BWI76_RS16070 at 3332.410 kb on + strand, within BWI76_RS16070 at 3332.465 kb on - strand, within BWI76_RS16070 at 3332.467 kb on - strand, within BWI76_RS16070 at 3332.713 kb on - strand, within BWI76_RS16070 at 3332.927 kb on + strand, within BWI76_RS16070 at 3333.112 kb on - strand at 3333.291 kb on + strand at 3333.299 kb on - strand at 3333.926 kb on - strand, within BWI76_RS16075 at 3334.261 kb on + strand at 3334.356 kb on + strand, within BWI76_RS16080 at 3334.807 kb on - strand, within BWI76_RS16080 at 3334.856 kb on - strand, within BWI76_RS16080
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,332,387 + BWI76_RS16070 0.16 -0.4 3,332,387 + BWI76_RS16070 0.16 -1.3 3,332,387 + BWI76_RS16070 0.16 +0.2 3,332,410 + BWI76_RS16070 0.19 -1.3 3,332,465 - BWI76_RS16070 0.25 +0.3 3,332,467 - BWI76_RS16070 0.25 -0.8 3,332,713 - BWI76_RS16070 0.52 +0.2 3,332,927 + BWI76_RS16070 0.76 -2.3 3,333,112 - +0.5 3,333,291 + +1.4 3,333,299 - +1.0 3,333,926 - BWI76_RS16075 0.75 +1.0 3,334,261 + +0.7 3,334,356 + BWI76_RS16080 0.15 +0.2 3,334,807 - BWI76_RS16080 0.66 +0.0 3,334,856 - BWI76_RS16080 0.71 +1.2
Or see this region's nucleotide sequence