Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09725 and BWI76_RS09730 are separated by 53 nucleotides BWI76_RS09730 and BWI76_RS09735 are separated by 203 nucleotides
BWI76_RS09725: BWI76_RS09725 - MurR/RpiR family transcriptional regulator, at 2,037,972 to 2,038,829
_RS09725
BWI76_RS09730: BWI76_RS09730 - pyruvate formate lyase 1-activating protein, at 2,038,883 to 2,039,623
_RS09730
BWI76_RS09735: BWI76_RS09735 - formate acetyltransferase, at 2,039,827 to 2,042,109
_RS09735
Position (kb)
2038
2039
2040 Strain fitness (log2 ratio)
-2
-1
0
1 at 2038.181 kb on + strand, within BWI76_RS09725 at 2038.544 kb on + strand, within BWI76_RS09725 at 2038.585 kb on + strand, within BWI76_RS09725 at 2038.785 kb on + strand at 2038.881 kb on + strand at 2039.113 kb on - strand, within BWI76_RS09730 at 2039.385 kb on - strand, within BWI76_RS09730 at 2039.572 kb on - strand at 2039.746 kb on - strand at 2039.846 kb on - strand at 2039.846 kb on - strand at 2039.900 kb on + strand at 2040.199 kb on - strand, within BWI76_RS09735 at 2040.336 kb on - strand, within BWI76_RS09735 at 2040.336 kb on - strand, within BWI76_RS09735 at 2040.562 kb on + strand, within BWI76_RS09735
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,038,181 + BWI76_RS09725 0.24 +0.3 2,038,544 + BWI76_RS09725 0.67 -0.1 2,038,585 + BWI76_RS09725 0.71 +0.5 2,038,785 + -0.5 2,038,881 + -1.0 2,039,113 - BWI76_RS09730 0.31 -1.0 2,039,385 - BWI76_RS09730 0.68 -1.8 2,039,572 - -0.0 2,039,746 - -0.1 2,039,846 - +0.1 2,039,846 - -1.6 2,039,900 + +1.0 2,040,199 - BWI76_RS09735 0.16 +0.3 2,040,336 - BWI76_RS09735 0.22 -0.2 2,040,336 - BWI76_RS09735 0.22 +1.7 2,040,562 + BWI76_RS09735 0.32 -0.2
Or see this region's nucleotide sequence