Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09635 and BWI76_RS09640 are separated by 0 nucleotides BWI76_RS09640 and BWI76_RS09645 are separated by 114 nucleotides
BWI76_RS09635: BWI76_RS09635 - amino acid ABC transporter ATP-binding protein, at 2,015,173 to 2,016,894
_RS09635
BWI76_RS09640: BWI76_RS09640 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 2,016,895 to 2,018,661
_RS09640
BWI76_RS09645: BWI76_RS09645 - thioredoxin-disulfide reductase, at 2,018,776 to 2,019,744
_RS09645
Position (kb)
2016
2017
2018
2019 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2016.197 kb on - strand, within BWI76_RS09635 at 2016.501 kb on + strand, within BWI76_RS09635 at 2016.577 kb on - strand, within BWI76_RS09635 at 2017.001 kb on - strand at 2017.007 kb on + strand at 2017.216 kb on - strand, within BWI76_RS09640 at 2017.319 kb on + strand, within BWI76_RS09640 at 2017.355 kb on - strand, within BWI76_RS09640 at 2017.392 kb on - strand, within BWI76_RS09640 at 2017.817 kb on - strand, within BWI76_RS09640 at 2018.358 kb on - strand, within BWI76_RS09640 at 2018.799 kb on + strand at 2019.640 kb on + strand, within BWI76_RS09645
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,016,197 - BWI76_RS09635 0.59 -0.6 2,016,501 + BWI76_RS09635 0.77 +3.3 2,016,577 - BWI76_RS09635 0.82 +1.0 2,017,001 - -1.4 2,017,007 + +1.4 2,017,216 - BWI76_RS09640 0.18 -1.4 2,017,319 + BWI76_RS09640 0.24 +1.7 2,017,355 - BWI76_RS09640 0.26 -1.4 2,017,392 - BWI76_RS09640 0.28 +1.9 2,017,817 - BWI76_RS09640 0.52 +1.0 2,018,358 - BWI76_RS09640 0.83 -0.0 2,018,799 + -0.0 2,019,640 + BWI76_RS09645 0.89 -0.8
Or see this region's nucleotide sequence