Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09145 and BWI76_RS09150 are separated by 28 nucleotides BWI76_RS09150 and BWI76_RS09155 are separated by 125 nucleotides BWI76_RS09155 and BWI76_RS09160 are separated by 318 nucleotides
BWI76_RS09145: BWI76_RS09145 - serine-type D-Ala-D-Ala carboxypeptidase, at 1,931,960 to 1,933,162
_RS09145
BWI76_RS09150: BWI76_RS09150 - DNA-binding transcriptional repressor DeoR, at 1,933,191 to 1,933,949
_RS09150
BWI76_RS09155: BWI76_RS09155 - undecaprenyl-diphosphatase, at 1,934,075 to 1,934,668
_RS09155
BWI76_RS09160: BWI76_RS09160 - multidrug transporter MdfA, at 1,934,987 to 1,936,222
_RS09160
Position (kb) 1934
1935 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1933.337 kb on + strand, within BWI76_RS09150 at 1933.391 kb on + strand, within BWI76_RS09150 at 1933.393 kb on - strand, within BWI76_RS09150 at 1933.765 kb on - strand, within BWI76_RS09150 at 1933.892 kb on - strand at 1933.896 kb on + strand at 1934.328 kb on - strand, within BWI76_RS09155 at 1934.407 kb on - strand, within BWI76_RS09155 at 1934.407 kb on - strand, within BWI76_RS09155 at 1934.410 kb on + strand, within BWI76_RS09155 at 1934.523 kb on + strand, within BWI76_RS09155 at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.633 kb on - strand at 1934.633 kb on - strand at 1934.633 kb on - strand at 1934.633 kb on - strand at 1934.678 kb on - strand at 1934.697 kb on - strand at 1934.737 kb on - strand at 1934.737 kb on - strand at 1934.801 kb on + strand at 1934.803 kb on + strand at 1934.819 kb on + strand at 1934.819 kb on + strand at 1934.891 kb on - strand at 1934.892 kb on - strand at 1934.920 kb on + strand at 1934.955 kb on - strand at 1934.964 kb on + strand at 1935.016 kb on + strand at 1935.016 kb on + strand at 1935.016 kb on + strand at 1935.022 kb on + strand at 1935.024 kb on - strand at 1935.024 kb on - strand at 1935.037 kb on - strand at 1935.042 kb on - strand at 1935.053 kb on + strand at 1935.087 kb on + strand at 1935.109 kb on - strand at 1935.149 kb on - strand, within BWI76_RS09160 at 1935.244 kb on + strand, within BWI76_RS09160 at 1935.244 kb on + strand, within BWI76_RS09160 at 1935.331 kb on + strand, within BWI76_RS09160 at 1935.341 kb on - strand, within BWI76_RS09160 at 1935.341 kb on - strand, within BWI76_RS09160 at 1935.394 kb on + strand, within BWI76_RS09160
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,933,337 + BWI76_RS09150 0.19 +0.2 1,933,391 + BWI76_RS09150 0.26 -0.1 1,933,393 - BWI76_RS09150 0.27 -0.6 1,933,765 - BWI76_RS09150 0.76 -0.7 1,933,892 - +0.6 1,933,896 + +0.4 1,934,328 - BWI76_RS09155 0.43 +0.1 1,934,407 - BWI76_RS09155 0.56 -0.2 1,934,407 - BWI76_RS09155 0.56 -2.2 1,934,410 + BWI76_RS09155 0.56 -1.0 1,934,523 + BWI76_RS09155 0.75 -2.9 1,934,625 + -1.7 1,934,625 + -0.8 1,934,625 + -2.7 1,934,625 + -2.0 1,934,625 + +0.0 1,934,625 + -1.1 1,934,633 - -3.1 1,934,633 - +0.7 1,934,633 - +0.5 1,934,633 - -2.4 1,934,678 - -0.0 1,934,697 - -0.6 1,934,737 - +1.1 1,934,737 - -0.1 1,934,801 + +1.0 1,934,803 + -0.5 1,934,819 + -0.6 1,934,819 + -1.4 1,934,891 - -0.3 1,934,892 - -0.0 1,934,920 + +0.4 1,934,955 - -0.3 1,934,964 + -0.5 1,935,016 + +1.6 1,935,016 + +0.6 1,935,016 + +0.1 1,935,022 + -0.1 1,935,024 - -2.6 1,935,024 - -0.0 1,935,037 - -1.9 1,935,042 - -0.3 1,935,053 + +1.2 1,935,087 + +0.6 1,935,109 - -0.8 1,935,149 - BWI76_RS09160 0.13 +0.8 1,935,244 + BWI76_RS09160 0.21 -0.0 1,935,244 + BWI76_RS09160 0.21 -2.4 1,935,331 + BWI76_RS09160 0.28 -0.6 1,935,341 - BWI76_RS09160 0.29 -0.6 1,935,341 - BWI76_RS09160 0.29 -2.2 1,935,394 + BWI76_RS09160 0.33 +0.4
Or see this region's nucleotide sequence