Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07600 and BWI76_RS07605 are separated by 186 nucleotides BWI76_RS07605 and BWI76_RS07610 are separated by 49 nucleotides BWI76_RS07610 and BWI76_RS07615 are separated by 14 nucleotides
BWI76_RS07600: BWI76_RS07600 - aspartate aminotransferase family protein, at 1,609,190 to 1,610,527
_RS07600
BWI76_RS07605: BWI76_RS07605 - N-acetyltransferase GCN5, at 1,610,714 to 1,611,409
_RS07605
BWI76_RS07610: BWI76_RS07610 - choline dehydrogenase, at 1,611,459 to 1,613,123
_RS07610
BWI76_RS07615: BWI76_RS07615 - betaine-aldehyde dehydrogenase, at 1,613,138 to 1,614,610
_RS07615
Position (kb) 1611
1612
1613
1614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1610.576 kb on + strand at 1610.586 kb on + strand at 1610.697 kb on + strand at 1610.795 kb on + strand, within BWI76_RS07605 at 1610.827 kb on + strand, within BWI76_RS07605 at 1610.872 kb on - strand, within BWI76_RS07605 at 1610.956 kb on + strand, within BWI76_RS07605 at 1611.450 kb on + strand at 1611.458 kb on - strand at 1612.209 kb on - strand, within BWI76_RS07610 at 1612.221 kb on - strand, within BWI76_RS07610 at 1612.354 kb on - strand, within BWI76_RS07610 at 1612.404 kb on - strand, within BWI76_RS07610 at 1612.576 kb on - strand, within BWI76_RS07610 at 1612.678 kb on - strand, within BWI76_RS07610 at 1612.678 kb on - strand, within BWI76_RS07610 at 1612.968 kb on + strand at 1613.568 kb on + strand, within BWI76_RS07615 at 1613.764 kb on - strand, within BWI76_RS07615 at 1613.769 kb on - strand, within BWI76_RS07615 at 1613.777 kb on - strand, within BWI76_RS07615 at 1614.049 kb on + strand, within BWI76_RS07615 at 1614.090 kb on - strand, within BWI76_RS07615
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,610,576 + +0.9 1,610,586 + +0.8 1,610,697 + +0.7 1,610,795 + BWI76_RS07605 0.12 -0.4 1,610,827 + BWI76_RS07605 0.16 -0.4 1,610,872 - BWI76_RS07605 0.23 +0.1 1,610,956 + BWI76_RS07605 0.35 +0.1 1,611,450 + +0.4 1,611,458 - +0.8 1,612,209 - BWI76_RS07610 0.45 +3.6 1,612,221 - BWI76_RS07610 0.46 +0.2 1,612,354 - BWI76_RS07610 0.54 -1.4 1,612,404 - BWI76_RS07610 0.57 -0.5 1,612,576 - BWI76_RS07610 0.67 +0.9 1,612,678 - BWI76_RS07610 0.73 -3.1 1,612,678 - BWI76_RS07610 0.73 +4.0 1,612,968 + -0.3 1,613,568 + BWI76_RS07615 0.29 +0.1 1,613,764 - BWI76_RS07615 0.42 +0.3 1,613,769 - BWI76_RS07615 0.43 +0.0 1,613,777 - BWI76_RS07615 0.43 +0.6 1,614,049 + BWI76_RS07615 0.62 +0.0 1,614,090 - BWI76_RS07615 0.65 +0.2
Or see this region's nucleotide sequence