Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06225 and BWI76_RS06230 are separated by 294 nucleotides BWI76_RS06230 and BWI76_RS06235 are separated by 21 nucleotides
BWI76_RS06225: BWI76_RS06225 - exonuclease sbcCD subunit D, at 1,306,246 to 1,307,448
_RS06225
BWI76_RS06230: BWI76_RS06230 - DNA-binding response regulator, at 1,307,743 to 1,308,432
_RS06230
BWI76_RS06235: BWI76_RS06235 - PAS domain-containing sensor histidine kinase, at 1,308,454 to 1,309,743
_RS06235
Position (kb)
1307
1308
1309 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1306.854 kb on - strand, within BWI76_RS06225 at 1306.946 kb on - strand, within BWI76_RS06225 at 1307.040 kb on - strand, within BWI76_RS06225 at 1307.278 kb on + strand, within BWI76_RS06225 at 1307.278 kb on + strand, within BWI76_RS06225 at 1307.431 kb on + strand at 1307.432 kb on - strand at 1307.514 kb on - strand at 1307.514 kb on - strand at 1307.530 kb on + strand at 1307.540 kb on - strand at 1307.567 kb on + strand at 1307.575 kb on - strand at 1307.707 kb on + strand at 1307.707 kb on + strand at 1307.707 kb on + strand at 1307.855 kb on + strand, within BWI76_RS06230 at 1307.865 kb on + strand, within BWI76_RS06230 at 1307.933 kb on + strand, within BWI76_RS06230 at 1308.435 kb on + strand at 1308.444 kb on + strand at 1308.454 kb on + strand at 1308.850 kb on - strand, within BWI76_RS06235 at 1309.114 kb on + strand, within BWI76_RS06235 at 1309.256 kb on - strand, within BWI76_RS06235 at 1309.312 kb on + strand, within BWI76_RS06235 at 1309.374 kb on - strand, within BWI76_RS06235
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,306,854 - BWI76_RS06225 0.51 +1.0 1,306,946 - BWI76_RS06225 0.58 -1.5 1,307,040 - BWI76_RS06225 0.66 +0.5 1,307,278 + BWI76_RS06225 0.86 +3.4 1,307,278 + BWI76_RS06225 0.86 +0.1 1,307,431 + -0.8 1,307,432 - -0.6 1,307,514 - +0.0 1,307,514 - +0.9 1,307,530 + +0.4 1,307,540 - -4.3 1,307,567 + +3.3 1,307,575 - -1.3 1,307,707 + -1.7 1,307,707 + -0.1 1,307,707 + -2.8 1,307,855 + BWI76_RS06230 0.16 +1.0 1,307,865 + BWI76_RS06230 0.18 +0.7 1,307,933 + BWI76_RS06230 0.28 +0.8 1,308,435 + -2.6 1,308,444 + +0.3 1,308,454 + +0.7 1,308,850 - BWI76_RS06235 0.31 +1.5 1,309,114 + BWI76_RS06235 0.51 +0.2 1,309,256 - BWI76_RS06235 0.62 +1.1 1,309,312 + BWI76_RS06235 0.67 -1.0 1,309,374 - BWI76_RS06235 0.71 -0.1
Or see this region's nucleotide sequence