Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17360

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
3,947,232	+		PFLU_RS17355	0.75	+1.0
3,947,425	+				-0.2
3,947,426	-				-0.3
3,947,477	+				+0.2
3,947,477	+				+0.8
3,947,477	+				+0.9
3,947,477	+				-0.5
3,947,478	-				-1.0
3,947,478	-				+1.3
3,947,478	-				+0.2
3,947,487	-				+1.0
3,947,487	-				+1.0
3,947,487	-				+1.3
3,947,487	-				+0.8
3,947,487	-				-1.3
3,947,487	-				+0.2
3,947,487	-				-1.0
3,947,487	-				-1.0
3,947,487	-				+1.0
3,947,487	-				-0.3
3,947,487	-				+1.5
3,947,487	-				+1.0
3,947,487	-				-0.3
3,947,546	+				+0.3
3,947,613	-				-2.5
3,947,613	-				-2.8
3,947,613	-				+1.1
3,947,613	-				-0.2
3,947,613	-				+0.5
3,947,897	+				-1.9
3,947,911	+				-0.3
3,947,911	+				+1.9
3,947,911	+				+0.5
3,947,915	+				-0.1
3,947,922	+				-1.4
3,947,922	+				+0.7
3,947,922	+				-0.3
3,947,926	+				-0.7
3,947,926	+				-1.7
3,947,926	+				-0.1
3,947,926	+				-0.7
3,948,005	+				-1.6
3,948,063	+				-1.8
3,948,067	+				-1.5
3,948,067	+				-1.2
3,948,067	+				+1.3
3,948,067	+				+3.5
3,948,067	+				+1.7
3,948,067	+				-1.3
3,948,067	+				+3.4
3,948,067	+				+0.4
3,948,067	+				-0.1
3,948,067	+				-0.3
3,948,067	+				+0.3
3,948,068	-				-0.7
3,948,068	-				-1.3
3,948,068	-				-0.8
3,948,068	-				+1.3
3,948,068	-				-1.7
3,948,068	-				-2.4
3,948,068	-				+0.4
3,948,068	-				+2.1
3,948,068	-				+0.3
3,948,068	-				+1.8
3,948,068	-				-0.8
3,948,068	-				+0.3
3,948,068	-				+0.3
3,948,068	-				-2.1
3,948,068	-				+0.9
3,948,068	-				+1.6
3,948,068	-				+0.2
3,948,150	-		PFLU_RS17360	0.21	-2.3
3,948,180	+		PFLU_RS17360	0.30	+0.6
3,948,180	+		PFLU_RS17360	0.30	+0.3
3,948,180	+		PFLU_RS17360	0.30	+1.7
3,948,180	+		PFLU_RS17360	0.30	+0.6
3,948,180	+		PFLU_RS17360	0.30	-0.4
3,948,181	-		PFLU_RS17360	0.30	-1.7
3,948,181	-		PFLU_RS17360	0.30	-0.3
3,948,181	-		PFLU_RS17360	0.30	+1.1
3,948,181	-		PFLU_RS17360	0.30	+0.5
3,948,182	+		PFLU_RS17360	0.30	-1.6
3,948,182	+		PFLU_RS17360	0.30	+1.1
3,948,182	+		PFLU_RS17360	0.30	-1.5
3,948,182	+		PFLU_RS17360	0.30	+1.1
3,948,182	+		PFLU_RS17360	0.30	+0.1
3,948,183	-		PFLU_RS17360	0.30	-0.3
3,948,183	-		PFLU_RS17360	0.30	+0.9
3,948,305	+		PFLU_RS17360	0.66	+1.7
3,948,305	+		PFLU_RS17360	0.66	-0.3
3,948,305	+		PFLU_RS17360	0.66	-0.7
3,948,305	+		PFLU_RS17360	0.66	-0.3
3,948,305	+		PFLU_RS17360	0.66	+0.7
3,948,305	+		PFLU_RS17360	0.66	+0.6
3,948,305	+		PFLU_RS17360	0.66	-2.5
3,948,306	-		PFLU_RS17360	0.66	-0.3
3,948,306	-		PFLU_RS17360	0.66	+0.6
3,948,306	-		PFLU_RS17360	0.66	+1.9
3,948,306	-		PFLU_RS17360	0.66	+0.3
3,948,437	+				-1.0
3,948,438	-				+1.1
3,948,444	-				+0.3
3,948,468	+				-2.5
3,948,581	+		PFLU_RS17365	0.18	+0.0
3,948,581	+		PFLU_RS17365	0.18	-0.4
3,948,581	+		PFLU_RS17365	0.18	-1.8
3,948,581	+		PFLU_RS17365	0.18	-1.0
3,948,581	+		PFLU_RS17365	0.18	+1.6
3,948,581	+		PFLU_RS17365	0.18	+0.0
3,948,581	+		PFLU_RS17365	0.18	-1.4
3,948,581	+		PFLU_RS17365	0.18	-0.7
3,948,581	+		PFLU_RS17365	0.18	-1.5
3,948,581	+		PFLU_RS17365	0.18	-1.3
3,948,581	+		PFLU_RS17365	0.18	+3.7
3,948,582	-		PFLU_RS17365	0.18	-2.1
3,948,582	-		PFLU_RS17365	0.18	+0.3
3,948,582	-		PFLU_RS17365	0.18	+0.7
3,948,582	-		PFLU_RS17365	0.18	+0.3
3,948,582	-		PFLU_RS17365	0.18	+0.3
3,948,582	-		PFLU_RS17365	0.18	-0.4
3,948,582	-		PFLU_RS17365	0.18	+1.3
3,948,582	-		PFLU_RS17365	0.18	+1.9
3,948,582	-		PFLU_RS17365	0.18	-0.5
3,948,604	+		PFLU_RS17365	0.21	-1.7
3,948,604	+		PFLU_RS17365	0.21	+0.3
3,948,605	-		PFLU_RS17365	0.21	+1.1
3,948,605	-		PFLU_RS17365	0.21	-1.0
3,948,605	-		PFLU_RS17365	0.21	-1.1
3,948,605	-		PFLU_RS17365	0.21	+0.1
3,948,605	-		PFLU_RS17365	0.21	+1.2
3,948,605	-		PFLU_RS17365	0.21	-2.0
3,948,633	+		PFLU_RS17365	0.26	+1.3
3,948,633	+		PFLU_RS17365	0.26	-1.0
3,948,633	+		PFLU_RS17365	0.26	+0.3
3,948,633	+		PFLU_RS17365	0.26	-1.3
3,948,634	-		PFLU_RS17365	0.26	+0.3
3,948,634	-		PFLU_RS17365	0.26	+1.6
3,948,634	-		PFLU_RS17365	0.26	+0.8
3,948,634	-		PFLU_RS17365	0.26	+0.7
3,948,634	-		PFLU_RS17365	0.26	-2.4
3,948,634	-		PFLU_RS17365	0.26	+2.5
3,948,634	-		PFLU_RS17365	0.26	+0.1
3,948,634	-		PFLU_RS17365	0.26	-2.0
3,948,634	-		PFLU_RS17365	0.26	-1.8
3,948,634	-		PFLU_RS17365	0.26	+0.3
3,948,651	+		PFLU_RS17365	0.29	-0.6
3,948,651	+		PFLU_RS17365	0.29	-0.0
3,948,652	-		PFLU_RS17365	0.29	+1.3
3,948,771	+		PFLU_RS17365	0.47	-2.1
3,948,772	-		PFLU_RS17365	0.47	+0.5
3,948,924	+		PFLU_RS17365	0.71	+1.5
3,948,925	-		PFLU_RS17365	0.71	-1.0
3,948,925	-		PFLU_RS17365	0.71	+4.6
3,948,925	-		PFLU_RS17365	0.71	-0.7
3,948,925	-		PFLU_RS17365	0.71	+0.2
3,948,992	+		PFLU_RS17365	0.81	-1.0
3,948,992	+		PFLU_RS17365	0.81	+1.1
3,948,993	-		PFLU_RS17365	0.82	+1.2
3,948,993	-		PFLU_RS17365	0.82	-1.4
3,948,993	-		PFLU_RS17365	0.82	-0.4
3,948,993	-		PFLU_RS17365	0.82	-2.1
3,948,993	-		PFLU_RS17365	0.82	+1.9
3,948,993	-		PFLU_RS17365	0.82	+0.2
3,949,085	+				+0.7
3,949,086	-				+0.3
3,949,086	-				-0.4
3,949,086	-				-1.5
3,949,086	-				-0.2
3,949,086	-				+0.0
3,949,086	-				+1.3
3,949,100	-				+1.0
3,949,196	+				+1.3
3,949,197	-				+0.4
3,949,199	+				-0.5
3,949,199	+				-1.0
3,949,200	-				-0.3
3,949,200	-				+0.0
3,949,222	+				-1.5
3,949,222	+				-2.8
3,949,223	-				+0.1
3,949,223	-				+2.1
3,949,229	+				+2.7
3,949,229	+				-0.7
3,949,230	-				+0.0
3,949,230	-				+1.9
3,949,230	-				-2.1
3,949,231	+				+0.6
3,949,232	-				-2.5
3,949,232	-				+0.8
3,949,243	+				+0.8
3,949,244	-				-2.3
3,949,291	-		PFLU_RS17370	0.17	-1.5
3,949,320	-		PFLU_RS17370	0.28	+0.2
3,949,320	-		PFLU_RS17370	0.28	-2.3
3,949,331	+		PFLU_RS17370	0.32	-1.7
3,949,331	+		PFLU_RS17370	0.32	-0.8
3,949,332	-		PFLU_RS17370	0.32	-0.4
3,949,332	-		PFLU_RS17370	0.32	+0.9
3,949,395	+		PFLU_RS17370	0.55	+1.4
3,949,395	+		PFLU_RS17370	0.55	-0.7
3,949,403	+		PFLU_RS17370	0.58	-1.8