Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18870 and HSERO_RS18875 are separated by 1 nucleotides HSERO_RS18875 and HSERO_RS18880 are separated by 685 nucleotides HSERO_RS18880 and HSERO_RS18885 are separated by 240 nucleotides
HSERO_RS18870: HSERO_RS18870 - ATPase, at 4,330,094 to 4,331,875
_RS18870
HSERO_RS18875: HSERO_RS18875 - ATPase, at 4,331,877 to 4,331,966
_RS18875
HSERO_RS18880: HSERO_RS18880 - diguanylate cyclase, at 4,332,652 to 4,334,868
_RS18880
HSERO_RS18885: HSERO_RS18885 - gamma-glutamyltransferase, at 4,335,109 to 4,336,692
_RS18885
Position (kb) 4332
4333
4334
4335 Strain fitness (log2 ratio) -2
-1
0
1 at 4331.672 kb on + strand, within HSERO_RS18870 at 4331.847 kb on - strand at 4331.862 kb on - strand at 4331.898 kb on - strand, within HSERO_RS18875 at 4332.041 kb on + strand at 4332.115 kb on - strand at 4332.242 kb on + strand at 4332.289 kb on - strand at 4332.546 kb on - strand at 4332.620 kb on - strand at 4332.804 kb on - strand at 4333.260 kb on + strand, within HSERO_RS18880 at 4333.722 kb on + strand, within HSERO_RS18880 at 4333.841 kb on - strand, within HSERO_RS18880 at 4334.115 kb on - strand, within HSERO_RS18880 at 4334.121 kb on + strand, within HSERO_RS18880 at 4334.210 kb on - strand, within HSERO_RS18880 at 4334.320 kb on - strand, within HSERO_RS18880 at 4334.423 kb on - strand, within HSERO_RS18880 at 4334.460 kb on + strand, within HSERO_RS18880 at 4334.460 kb on + strand, within HSERO_RS18880 at 4334.470 kb on + strand, within HSERO_RS18880 at 4334.506 kb on - strand at 4334.525 kb on + strand, within HSERO_RS18880 at 4334.664 kb on - strand at 4334.720 kb on + strand at 4334.745 kb on + strand at 4334.936 kb on - strand at 4335.040 kb on + strand at 4335.107 kb on + strand at 4335.160 kb on - strand at 4335.261 kb on - strand at 4335.406 kb on - strand, within HSERO_RS18885 at 4335.406 kb on - strand, within HSERO_RS18885 at 4335.570 kb on - strand, within HSERO_RS18885 at 4335.660 kb on + strand, within HSERO_RS18885 at 4335.813 kb on + strand, within HSERO_RS18885
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 4,331,672 + HSERO_RS18870 0.89 +0.4 4,331,847 - -0.1 4,331,862 - -0.1 4,331,898 - HSERO_RS18875 0.23 -0.1 4,332,041 + +0.1 4,332,115 - +0.9 4,332,242 + +0.1 4,332,289 - +0.2 4,332,546 - +0.2 4,332,620 - +0.6 4,332,804 - +0.0 4,333,260 + HSERO_RS18880 0.27 +0.4 4,333,722 + HSERO_RS18880 0.48 -0.3 4,333,841 - HSERO_RS18880 0.54 -0.1 4,334,115 - HSERO_RS18880 0.66 -0.2 4,334,121 + HSERO_RS18880 0.66 -0.2 4,334,210 - HSERO_RS18880 0.70 +0.1 4,334,320 - HSERO_RS18880 0.75 -0.1 4,334,423 - HSERO_RS18880 0.80 -0.7 4,334,460 + HSERO_RS18880 0.82 +0.1 4,334,460 + HSERO_RS18880 0.82 +0.1 4,334,470 + HSERO_RS18880 0.82 +0.4 4,334,506 - +0.8 4,334,525 + HSERO_RS18880 0.84 -0.9 4,334,664 - -0.1 4,334,720 + +0.3 4,334,745 + +0.3 4,334,936 - +0.4 4,335,040 + -0.7 4,335,107 + +0.2 4,335,160 - -0.5 4,335,261 - +0.2 4,335,406 - HSERO_RS18885 0.19 +0.3 4,335,406 - HSERO_RS18885 0.19 -0.0 4,335,570 - HSERO_RS18885 0.29 +0.4 4,335,660 + HSERO_RS18885 0.35 -1.8 4,335,813 + HSERO_RS18885 0.44 -0.2
Or see this region's nucleotide sequence