Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06975

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
1,587,548	+		HSERO_RS06970	0.48	-0.2
1,587,648	+		HSERO_RS06970	0.61	+0.1
1,587,688	-		HSERO_RS06970	0.66	+0.0
1,587,962	-				+0.3
1,588,344	+				-0.0
1,588,430	-				+0.2
1,588,436	-				-0.2
1,588,499	-				-0.7
1,588,504	-				+0.7
1,588,711	-		HSERO_RS06975	0.12	-0.2
1,588,713	-		HSERO_RS06975	0.12	-0.2
1,588,730	+		HSERO_RS06975	0.13	-0.4
1,588,797	-		HSERO_RS06975	0.15	-0.4
1,588,799	+		HSERO_RS06975	0.15	-0.1
1,588,855	+		HSERO_RS06975	0.18	+0.3
1,588,916	+		HSERO_RS06975	0.20	-0.9
1,588,916	+		HSERO_RS06975	0.20	-0.1
1,589,018	+		HSERO_RS06975	0.24	-0.0
1,589,018	+		HSERO_RS06975	0.24	+0.0
1,589,026	-		HSERO_RS06975	0.25	-0.3
1,589,026	-		HSERO_RS06975	0.25	-0.2
1,589,077	-		HSERO_RS06975	0.27	-0.1
1,589,131	+		HSERO_RS06975	0.29	-0.5
1,589,139	-		HSERO_RS06975	0.29	-0.5
1,589,228	+		HSERO_RS06975	0.33	-1.3
1,589,272	+		HSERO_RS06975	0.35	-0.9
1,589,272	+		HSERO_RS06975	0.35	-0.1
1,589,291	+		HSERO_RS06975	0.35	-0.5
1,589,291	+		HSERO_RS06975	0.35	-0.1
1,589,354	+		HSERO_RS06975	0.38	+0.1
1,589,362	-		HSERO_RS06975	0.38	-0.1
1,589,472	+		HSERO_RS06975	0.43	-0.3
1,589,482	+		HSERO_RS06975	0.43	-0.7
1,589,530	-		HSERO_RS06975	0.45	-1.5
1,589,645	+		HSERO_RS06975	0.50	-0.1
1,589,687	+		HSERO_RS06975	0.51	-0.2
1,589,688	+		HSERO_RS06975	0.51	-1.4
1,589,695	-		HSERO_RS06975	0.52	+0.0
1,589,859	+		HSERO_RS06975	0.58	-0.4
1,589,901	-		HSERO_RS06975	0.60	-0.5
1,589,903	+		HSERO_RS06975	0.60	-0.0
1,589,904	-		HSERO_RS06975	0.60	-0.1
1,589,954	+		HSERO_RS06975	0.62	-0.8
1,589,987	+		HSERO_RS06975	0.64	+0.1
1,589,987	+		HSERO_RS06975	0.64	+0.1
1,589,995	-		HSERO_RS06975	0.64	-1.3
1,589,995	-		HSERO_RS06975	0.64	-0.1
1,590,013	+		HSERO_RS06975	0.65	-0.0
1,590,176	+		HSERO_RS06975	0.71	-0.6
1,590,259	-		HSERO_RS06975	0.75	-0.1
1,590,295	+		HSERO_RS06975	0.76	-0.2
1,590,317	-		HSERO_RS06975	0.77	-0.6
1,590,716	-				-0.0
1,590,760	-				-1.2
1,590,780	+				-0.7
1,590,780	+				-2.4
1,590,788	-				-0.2
1,590,912	+				-0.4
1,591,147	+				-0.0
1,591,168	+				+0.2
1,591,168	+				-0.3
1,591,176	-				-0.6
1,591,183	-				-0.0
1,591,208	-				+0.2
1,591,208	-				-0.3
1,591,376	+				+0.6
1,591,569	+		HSERO_RS06980	0.19	-0.6
1,591,577	-		HSERO_RS06980	0.19	+0.4
1,591,584	+		HSERO_RS06980	0.20	-0.6
1,591,618	+		HSERO_RS06980	0.22	-0.7
1,591,626	-		HSERO_RS06980	0.22	-0.4
1,591,638	+		HSERO_RS06980	0.23	+0.3
1,591,772	+		HSERO_RS06980	0.30	+0.2