Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04065 and HSERO_RS04070 are separated by 90 nucleotides HSERO_RS04070 and HSERO_RS04075 overlap by 4 nucleotides HSERO_RS04075 and HSERO_RS04080 overlap by 20 nucleotides HSERO_RS04080 and HSERO_RS04085 are separated by 228 nucleotides
HSERO_RS04065: HSERO_RS04065 - pilus biosynthesis protein PilS, at 890,220 to 890,771
_RS04065
HSERO_RS04070: HSERO_RS04070 - hypothetical protein, at 890,862 to 891,359
_RS04070
HSERO_RS04075: HSERO_RS04075 - type IV prepilin PilV protein, at 891,356 to 892,759
_RS04075
HSERO_RS04080: HSERO_RS04080 - invasion protein, at 892,740 to 893,237
_RS04080
HSERO_RS04085: HSERO_RS04085 - twitching motility protein PilT, at 893,466 to 894,563
_RS04085
Position (kb) 891
892
893 Strain fitness (log2 ratio) -1
0
1 at 890.378 kb on + strand, within HSERO_RS04065 at 890.431 kb on - strand, within HSERO_RS04065 at 890.456 kb on + strand, within HSERO_RS04065 at 890.610 kb on - strand, within HSERO_RS04065 at 890.612 kb on + strand, within HSERO_RS04065 at 890.761 kb on - strand at 890.848 kb on + strand at 890.853 kb on - strand at 891.029 kb on + strand, within HSERO_RS04070 at 891.067 kb on + strand, within HSERO_RS04070 at 891.075 kb on - strand, within HSERO_RS04070 at 891.124 kb on - strand, within HSERO_RS04070 at 891.163 kb on + strand, within HSERO_RS04070 at 891.343 kb on - strand at 891.384 kb on + strand at 891.553 kb on + strand, within HSERO_RS04075 at 891.610 kb on + strand, within HSERO_RS04075 at 891.646 kb on + strand, within HSERO_RS04075 at 892.161 kb on + strand, within HSERO_RS04075 at 892.169 kb on - strand, within HSERO_RS04075 at 892.169 kb on - strand, within HSERO_RS04075 at 892.245 kb on + strand, within HSERO_RS04075 at 892.309 kb on - strand, within HSERO_RS04075 at 892.438 kb on + strand, within HSERO_RS04075 at 892.438 kb on + strand, within HSERO_RS04075 at 892.446 kb on - strand, within HSERO_RS04075 at 892.747 kb on + strand at 892.770 kb on - strand at 892.823 kb on + strand, within HSERO_RS04080 at 892.857 kb on + strand, within HSERO_RS04080 at 892.867 kb on + strand, within HSERO_RS04080 at 892.910 kb on + strand, within HSERO_RS04080 at 892.918 kb on - strand, within HSERO_RS04080 at 892.954 kb on - strand, within HSERO_RS04080 at 892.954 kb on - strand, within HSERO_RS04080 at 892.954 kb on - strand, within HSERO_RS04080 at 893.121 kb on + strand, within HSERO_RS04080 at 893.161 kb on + strand, within HSERO_RS04080 at 893.161 kb on + strand, within HSERO_RS04080 at 893.169 kb on - strand, within HSERO_RS04080 at 893.169 kb on - strand, within HSERO_RS04080 at 893.242 kb on - strand at 893.392 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 890,378 + HSERO_RS04065 0.29 -0.1 890,431 - HSERO_RS04065 0.38 +0.8 890,456 + HSERO_RS04065 0.43 -0.6 890,610 - HSERO_RS04065 0.71 +0.1 890,612 + HSERO_RS04065 0.71 +0.3 890,761 - +0.0 890,848 + -0.3 890,853 - +0.8 891,029 + HSERO_RS04070 0.34 -0.2 891,067 + HSERO_RS04070 0.41 -0.4 891,075 - HSERO_RS04070 0.43 +0.6 891,124 - HSERO_RS04070 0.53 +0.3 891,163 + HSERO_RS04070 0.60 +1.0 891,343 - +0.1 891,384 + -0.0 891,553 + HSERO_RS04075 0.14 +0.7 891,610 + HSERO_RS04075 0.18 -1.5 891,646 + HSERO_RS04075 0.21 -0.0 892,161 + HSERO_RS04075 0.57 +0.3 892,169 - HSERO_RS04075 0.58 +0.1 892,169 - HSERO_RS04075 0.58 +0.8 892,245 + HSERO_RS04075 0.63 -0.1 892,309 - HSERO_RS04075 0.68 +0.2 892,438 + HSERO_RS04075 0.77 -0.1 892,438 + HSERO_RS04075 0.77 -0.1 892,446 - HSERO_RS04075 0.78 -0.5 892,747 + -0.5 892,770 - +0.9 892,823 + HSERO_RS04080 0.17 +0.6 892,857 + HSERO_RS04080 0.23 +0.3 892,867 + HSERO_RS04080 0.26 -0.3 892,910 + HSERO_RS04080 0.34 -0.5 892,918 - HSERO_RS04080 0.36 -0.0 892,954 - HSERO_RS04080 0.43 +0.4 892,954 - HSERO_RS04080 0.43 +0.1 892,954 - HSERO_RS04080 0.43 +0.1 893,121 + HSERO_RS04080 0.77 +0.7 893,161 + HSERO_RS04080 0.85 +0.4 893,161 + HSERO_RS04080 0.85 +0.0 893,169 - HSERO_RS04080 0.86 -0.4 893,169 - HSERO_RS04080 0.86 +0.2 893,242 - +0.1 893,392 + -0.3
Or see this region's nucleotide sequence