Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21780

Experiment: RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
4,550,959	-		BWI76_RS21775	0.25	-0.7
4,550,959	-		BWI76_RS21775	0.25	-0.7
4,550,959	-		BWI76_RS21775	0.25	+0.9
4,550,959	-		BWI76_RS21775	0.25	+0.9
4,550,959	-		BWI76_RS21775	0.25	-1.1
4,550,959	-		BWI76_RS21775	0.25	+0.9
4,550,959	-		BWI76_RS21775	0.25	-2.3
4,550,994	+		BWI76_RS21775	0.29	-0.7
4,551,018	-		BWI76_RS21775	0.31	-1.0
4,551,018	-		BWI76_RS21775	0.31	-0.7
4,551,027	+		BWI76_RS21775	0.32	-1.1
4,551,035	-		BWI76_RS21775	0.33	-0.7
4,551,035	-		BWI76_RS21775	0.33	+0.3
4,551,035	-		BWI76_RS21775	0.33	-0.4
4,551,035	-		BWI76_RS21775	0.33	-1.4
4,551,074	+		BWI76_RS21775	0.37	+0.9
4,551,082	-		BWI76_RS21775	0.38	-2.0
4,551,082	-				-0.9
4,551,084	+		BWI76_RS21775	0.38	-2.5
4,551,084	+		BWI76_RS21775	0.38	-0.4
4,551,092	-		BWI76_RS21775	0.39	-0.1
4,551,095	-		BWI76_RS21775	0.39	-0.7
4,551,158	+		BWI76_RS21775	0.46	-2.8
4,551,166	-		BWI76_RS21775	0.47	-1.1
4,551,166	-		BWI76_RS21775	0.47	+0.9
4,551,173	+		BWI76_RS21775	0.48	-0.1
4,551,176	-		BWI76_RS21775	0.48	-0.7
4,551,235	+		BWI76_RS21775	0.54	-0.1
4,551,237	+		BWI76_RS21775	0.54	+0.2
4,551,283	+		BWI76_RS21775	0.59	+0.4
4,551,291	-		BWI76_RS21775	0.60	-1.3
4,551,331	+		BWI76_RS21775	0.64	-2.1
4,551,331	+		BWI76_RS21775	0.64	+0.0
4,551,339	-		BWI76_RS21775	0.65	-2.1
4,551,358	+		BWI76_RS21775	0.67	-0.7
4,551,366	+		BWI76_RS21775	0.68	+1.0
4,551,366	+		BWI76_RS21775	0.68	+0.9
4,551,374	-				+0.9
4,551,397	+		BWI76_RS21775	0.71	+0.1
4,551,397	+		BWI76_RS21775	0.71	-1.6
4,551,400	+		BWI76_RS21775	0.71	-1.5
4,551,402	+		BWI76_RS21775	0.72	-0.4
4,551,402	+		BWI76_RS21775	0.72	+3.7
4,551,402	+		BWI76_RS21775	0.72	+1.4
4,551,402	+		BWI76_RS21775	0.72	-1.5
4,551,402	+		BWI76_RS21775	0.72	-0.0
4,551,410	-		BWI76_RS21775	0.72	-0.1
4,551,410	-		BWI76_RS21775	0.72	+0.1
4,551,435	+		BWI76_RS21775	0.75	+0.1
4,551,435	+		BWI76_RS21775	0.75	-0.1
4,551,435	+		BWI76_RS21775	0.75	-0.1
4,551,443	-		BWI76_RS21775	0.76	-1.8
4,551,443	-		BWI76_RS21775	0.76	+0.9
4,551,443	-		BWI76_RS21775	0.76	-0.2
4,551,445	+		BWI76_RS21775	0.76	-2.1
4,551,452	-		BWI76_RS21775	0.77	-2.1
4,551,453	-		BWI76_RS21775	0.77	-2.3
4,551,453	-		BWI76_RS21775	0.77	-1.0
4,551,454	-		BWI76_RS21775	0.77	+0.2
4,551,464	-		BWI76_RS21775	0.78	-1.0
4,551,498	-		BWI76_RS21775	0.82	+0.9
4,551,504	+		BWI76_RS21775	0.82	-0.2
4,551,504	+		BWI76_RS21775	0.82	-0.5
4,551,504	+		BWI76_RS21775	0.82	-1.4
4,551,504	+		BWI76_RS21775	0.82	+0.9
4,551,504	+				-0.1
4,551,504	+		BWI76_RS21775	0.82	-3.1
4,551,504	+		BWI76_RS21775	0.82	-0.4
4,551,504	+		BWI76_RS21775	0.82	+0.3
4,551,504	+		BWI76_RS21775	0.82	-0.3
4,551,504	+		BWI76_RS21775	0.82	+0.6
4,551,504	+		BWI76_RS21775	0.82	+2.4
4,551,504	+		BWI76_RS21775	0.82	+0.6
4,551,504	+		BWI76_RS21775	0.82	-1.1
4,551,504	+		BWI76_RS21775	0.82	+0.4
4,551,504	+		BWI76_RS21775	0.82	-0.4
4,551,504	+		BWI76_RS21775	0.82	-1.7
4,551,504	+		BWI76_RS21775	0.82	+0.9
4,551,504	+		BWI76_RS21775	0.82	+0.5
4,551,504	+		BWI76_RS21775	0.82	-1.9
4,551,504	+		BWI76_RS21775	0.82	-2.2
4,551,506	+		BWI76_RS21775	0.82	-0.4
4,551,506	+		BWI76_RS21775	0.82	-0.8
4,551,512	-		BWI76_RS21775	0.83	-1.1
4,551,512	-		BWI76_RS21775	0.83	-1.7
4,551,512	-		BWI76_RS21775	0.83	-2.3
4,551,512	-		BWI76_RS21775	0.83	+0.1
4,551,512	-		BWI76_RS21775	0.83	-0.3
4,551,512	-		BWI76_RS21775	0.83	-1.4
4,551,512	-		BWI76_RS21775	0.83	-2.6
4,551,512	-		BWI76_RS21775	0.83	-0.1
4,551,512	-		BWI76_RS21775	0.83	-1.8
4,551,512	-		BWI76_RS21775	0.83	+0.9
4,551,512	-		BWI76_RS21775	0.83	-1.7
4,551,514	+		BWI76_RS21775	0.83	+0.1
4,551,514	-		BWI76_RS21775	0.83	+0.5
4,551,514	-		BWI76_RS21775	0.83	+0.0
4,551,522	-		BWI76_RS21775	0.84	-0.1
4,551,522	-		BWI76_RS21775	0.84	+0.7
4,551,524	-		BWI76_RS21775	0.84	+0.2
4,551,579	+				-0.5
4,551,579	+				-0.9
4,551,584	+				-0.3
4,551,587	-				-2.3
4,551,593	+				+0.9
4,551,599	-				-1.1
4,551,599	-				-1.0
4,551,601	-				+0.9
4,551,613	-				-1.0
4,551,635	+				+0.2
4,551,650	+				-2.4
4,551,675	+				+1.2
4,551,675	+				+0.2
4,551,685	+				-1.5
4,551,685	+				-1.5
4,551,701	-				-2.5
4,551,704	+				+0.2
4,551,704	+				-0.6
4,551,704	+				+0.1
4,551,704	+				+1.0
4,551,704	+				+0.2
4,551,712	-				-0.8
4,551,712	-				-0.1
4,551,716	+				-1.6
4,551,716	+				-0.0
4,551,716	+				-1.6
4,551,716	+				-1.2
4,551,724	-				+1.4
4,551,724	-				+0.6
4,551,740	-				-0.1
4,551,747	+				-1.7
4,551,776	-				+1.1
4,551,808	+				+1.0
4,551,808	+				-0.2
4,551,808	+				-0.0
4,551,809	+				-0.7
4,551,822	-				-0.1
4,551,832	+				+0.5
4,551,832	+				+0.4
4,551,832	+				-0.2
4,551,837	+				-0.8
4,551,840	-				-1.3
4,551,868	+				+0.3
4,551,868	+				-0.1
4,551,868	+				+2.9
4,551,868	+				-2.3
4,551,883	+				-1.7
4,551,890	-				-2.5
4,551,890	-				-1.1
4,551,890	-				-0.1
4,551,890	-				-2.3
4,551,963	-				-1.0
4,551,968	-		BWI76_RS21780	0.12	-1.0
4,551,970	+		BWI76_RS21780	0.14	-2.0
4,551,978	+		BWI76_RS21780	0.21	-0.1
4,552,031	-		BWI76_RS21780	0.65	-0.7
4,552,038	+		BWI76_RS21780	0.71	+0.9
4,552,038	+		BWI76_RS21780	0.71	-0.1
4,552,038	+		BWI76_RS21780	0.71	-1.6
4,552,038	+		BWI76_RS21780	0.71	-2.0
4,552,043	+				+0.9
4,552,043	+				+0.9
4,552,046	-		BWI76_RS21780	0.78	-1.5
4,552,046	-		BWI76_RS21780	0.78	-2.1
4,552,051	-		BWI76_RS21780	0.82	+1.9
4,552,060	-				-0.1
4,552,088	+				-0.5
4,552,128	-				-0.2
4,552,148	+				+0.6
4,552,155	+				-1.1
4,552,155	+				-0.1
4,552,160	+				-0.8
4,552,160	+				-0.9
4,552,163	-				-0.5
4,552,163	-				-0.1
4,552,163	-				-2.0
4,552,168	-				-0.1
4,552,205	+		BWI76_RS21785	0.12	-2.6
4,552,205	+		BWI76_RS21785	0.12	-0.1
4,552,213	+		BWI76_RS21785	0.13	-0.1
4,552,221	-		BWI76_RS21785	0.14	-1.7
4,552,238	+		BWI76_RS21785	0.17	+0.9
4,552,238	+		BWI76_RS21785	0.17	+0.1
4,552,238	+		BWI76_RS21785	0.17	+0.9
4,552,246	-		BWI76_RS21785	0.19	+0.6
4,552,261	+		BWI76_RS21785	0.21	-2.0
4,552,261	-		BWI76_RS21785	0.21	+0.4
4,552,290	+		BWI76_RS21785	0.26	-1.7
4,552,298	+		BWI76_RS21785	0.27	+0.1
4,552,298	-		BWI76_RS21785	0.27	+0.1
4,552,306	-		BWI76_RS21785	0.29	+0.6
4,552,316	-		BWI76_RS21785	0.30	+1.0
4,552,331	+		BWI76_RS21785	0.33	-1.1
4,552,331	+		BWI76_RS21785	0.33	-1.7
4,552,331	+				-1.1
4,552,331	+		BWI76_RS21785	0.33	-0.8
4,552,336	+		BWI76_RS21785	0.33	+0.7
4,552,336	+		BWI76_RS21785	0.33	-1.5
4,552,340	-		BWI76_RS21785	0.34	-0.4
4,552,381	+		BWI76_RS21785	0.41	-2.1
4,552,484	-		BWI76_RS21785	0.58	-0.1
4,552,497	+		BWI76_RS21785	0.60	-0.7
4,552,516	+		BWI76_RS21785	0.63	+0.4
4,552,524	-		BWI76_RS21785	0.65	+0.4
4,552,565	+		BWI76_RS21785	0.71	-3.4
4,552,566	+		BWI76_RS21785	0.72	-0.7
4,552,568	-		BWI76_RS21785	0.72	+0.5
4,552,573	-		BWI76_RS21785	0.73	-0.7
4,552,578	-		BWI76_RS21785	0.74	-2.0
4,552,682	-				-1.0
4,552,686	+				-1.7
4,552,707	+				-0.6
4,552,723	-				-3.1
4,552,738	-				-2.1
4,552,739	+				+0.9
4,552,749	+				+1.1
4,552,755	+				+2.7
4,552,755	+				+0.7
4,552,756	-				-1.5
4,552,763	-				+0.9
4,552,770	+				+2.1
4,552,770	+				+0.5
4,552,770	+				-1.5
4,552,770	+				+0.4
4,552,770	+				+1.1
4,552,770	+				+0.7
4,552,770	+				+1.5
4,552,770	+				+1.0
4,552,770	+				-1.1
4,552,770	+				-0.7
4,552,770	+				+0.2
4,552,770	+				-2.0
4,552,770	+				-1.7
4,552,770	+				+0.4
4,552,770	+				+0.0
4,552,770	+				-1.5
4,552,778	-				+0.5
4,552,778	-				-0.1
4,552,778	-				-2.3
4,552,778	-				-1.7
4,552,778	-				-1.1
4,552,778	-				+0.6
4,552,778	-				-1.3
4,552,778	-				-1.1
4,552,778	-				+0.9
4,552,778	-				+0.9
4,552,778	-				-0.3
4,552,778	-				-0.8
4,552,778	-				-0.7
4,552,778	-				-1.0
4,552,778	-				-1.3
4,552,788	-				-1.1
4,552,788	-				-0.3
4,552,789	-				+0.0
4,552,807	+				+0.7
4,552,811	+				-1.5
4,552,815	-				-0.0
4,552,822	+				-3.1
4,552,822	+				-0.8
4,552,831	+				+0.6
4,552,841	+				+0.3
4,552,841	+				+0.6
4,552,869	-				+0.9
4,552,899	-				+0.9
4,552,916	+				-0.4
4,552,917	+				-1.5
4,552,922	+				-2.0
4,552,924	+				+0.9
4,552,924	+				-0.7
4,552,924	+				-1.0
4,552,932	+				+0.1
4,552,932	-				-2.6
4,552,932	-				-1.4
4,552,932	-				-1.1
4,552,939	+				-1.1
4,552,949	-				-0.3
4,552,951	+				+1.4
4,552,964	+				-1.0
4,552,975	+				-2.5
4,552,988	-				-0.1
4,553,038	+				-2.6