Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19295

Experiment: RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
4,018,494	-		BWI76_RS19285	0.43	+1.0
4,018,631	-		BWI76_RS19285	0.58	-1.4
4,018,687	-		BWI76_RS19285	0.65	-0.2
4,018,797	+		BWI76_RS19285	0.77	-0.5
4,018,797	+		BWI76_RS19285	0.77	+0.1
4,018,805	-		BWI76_RS19285	0.78	+0.8
4,018,805	-		BWI76_RS19285	0.78	-0.2
4,018,805	-		BWI76_RS19285	0.78	+0.9
4,018,815	-		BWI76_RS19285	0.79	-0.3
4,018,815	-		BWI76_RS19285	0.79	+1.0
4,018,891	-		BWI76_RS19285	0.87	-0.5
4,018,973	-				-0.5
4,018,991	+				+0.5
4,018,991	+				+0.8
4,018,999	-				+0.1
4,018,999	-				-0.9
4,019,001	+				-0.9
4,019,001	+				-0.2
4,019,037	+				-0.5
4,019,059	+		BWI76_RS19290	0.12	-1.5
4,019,088	-		BWI76_RS19290	0.18	-0.1
4,019,132	-		BWI76_RS19290	0.27	+1.1
4,019,132	-		BWI76_RS19290	0.27	+0.3
4,019,145	-		BWI76_RS19290	0.30	+0.0
4,019,152	+		BWI76_RS19290	0.32	+1.1
4,019,154	+		BWI76_RS19290	0.32	+0.5
4,019,178	-		BWI76_RS19290	0.37	+0.6
4,019,187	+		BWI76_RS19290	0.39	-4.4
4,019,187	+		BWI76_RS19290	0.39	+0.1
4,019,191	+		BWI76_RS19290	0.40	-0.1
4,019,212	+		BWI76_RS19290	0.44	-1.2
4,019,220	-		BWI76_RS19290	0.46	+0.9
4,019,238	-		BWI76_RS19290	0.50	-0.1
4,019,295	-		BWI76_RS19290	0.62	-0.7
4,019,300	+		BWI76_RS19290	0.63	+0.2
4,019,302	+		BWI76_RS19290	0.63	+1.2
4,019,308	-		BWI76_RS19290	0.65	+1.8
4,019,308	-		BWI76_RS19290	0.65	+0.8
4,019,308	-		BWI76_RS19290	0.65	+0.7
4,019,348	-		BWI76_RS19290	0.73	+0.0
4,019,356	+		BWI76_RS19290	0.75	-1.4
4,019,356	+		BWI76_RS19290	0.75	+0.2
4,019,364	-		BWI76_RS19290	0.77	-0.2
4,019,364	-		BWI76_RS19290	0.77	-1.5
4,019,364	-		BWI76_RS19290	0.77	-0.3
4,019,364	-		BWI76_RS19290	0.77	-2.1
4,019,364	-		BWI76_RS19290	0.77	+0.4
4,019,369	-		BWI76_RS19290	0.78	+0.5
4,019,544	+		BWI76_RS19295	0.10	-1.8
4,019,572	+		BWI76_RS19295	0.14	-1.0
4,019,572	+		BWI76_RS19295	0.14	+0.8
4,019,574	-		BWI76_RS19295	0.14	-1.8
4,019,574	-		BWI76_RS19295	0.14	+1.2
4,019,575	-		BWI76_RS19295	0.14	-0.2
4,019,580	-		BWI76_RS19295	0.15	+1.8
4,019,580	-		BWI76_RS19295	0.15	-0.0
4,019,580	-		BWI76_RS19295	0.15	-0.2
4,019,711	+		BWI76_RS19295	0.31	-1.8
4,019,719	-		BWI76_RS19295	0.32	+1.5
4,019,768	+				-2.2
4,019,768	+		BWI76_RS19295	0.38	-0.5
4,019,768	+		BWI76_RS19295	0.38	+0.8
4,019,775	+		BWI76_RS19295	0.39	-0.8
4,019,775	+		BWI76_RS19295	0.39	-3.1
4,019,775	+				+0.8
4,019,775	+		BWI76_RS19295	0.39	-0.3
4,019,775	+		BWI76_RS19295	0.39	+2.4
4,019,775	+		BWI76_RS19295	0.39	-1.5
4,019,781	-		BWI76_RS19295	0.40	+2.1
4,019,783	-		BWI76_RS19295	0.40	-1.4
4,019,783	-		BWI76_RS19295	0.40	+0.8
4,019,799	-		BWI76_RS19295	0.42	-2.8
4,019,801	+		BWI76_RS19295	0.42	-0.8
4,019,801	+		BWI76_RS19295	0.42	-1.2
4,019,803	+		BWI76_RS19295	0.43	-0.2
4,019,809	-		BWI76_RS19295	0.43	+0.8
4,019,809	-		BWI76_RS19295	0.43	+0.2
4,019,809	-		BWI76_RS19295	0.43	-3.1
4,019,809	-		BWI76_RS19295	0.43	+0.3
4,019,809	-		BWI76_RS19295	0.43	-1.2
4,019,841	+		BWI76_RS19295	0.47	-1.8
4,019,858	+		BWI76_RS19295	0.49	+0.4
4,019,858	+		BWI76_RS19295	0.49	-0.2
4,019,864	+		BWI76_RS19295	0.50	-0.5
4,019,866	-		BWI76_RS19295	0.50	-0.1
4,019,866	-		BWI76_RS19295	0.50	-0.2
4,019,866	-		BWI76_RS19295	0.50	-0.1
4,019,866	-				-1.8
4,019,867	-		BWI76_RS19295	0.50	-1.0
4,019,872	-		BWI76_RS19295	0.51	+1.2
4,019,872	-		BWI76_RS19295	0.51	-0.2
4,019,899	-		BWI76_RS19295	0.54	-0.8
4,019,950	-		BWI76_RS19295	0.61	-1.0
4,019,960	+		BWI76_RS19295	0.62	-0.7
4,019,962	-		BWI76_RS19295	0.62	-2.3
4,019,962	-		BWI76_RS19295	0.62	-2.5
4,020,022	-		BWI76_RS19295	0.70	-0.9
4,020,045	-		BWI76_RS19295	0.72	-0.8
4,020,068	+				-0.2
4,020,071	-		BWI76_RS19295	0.76	+0.8
4,020,074	-		BWI76_RS19295	0.76	-1.8
4,020,076	-		BWI76_RS19295	0.76	-1.5
4,020,076	-		BWI76_RS19295	0.76	+2.3
4,020,076	-		BWI76_RS19295	0.76	+0.8
4,020,076	-		BWI76_RS19295	0.76	-1.6
4,020,076	-				+0.8
4,020,076	-		BWI76_RS19295	0.76	-0.7
4,020,076	-		BWI76_RS19295	0.76	-1.0
4,020,076	-		BWI76_RS19295	0.76	-0.5
4,020,076	-		BWI76_RS19295	0.76	-1.3
4,020,076	-		BWI76_RS19295	0.76	+0.4
4,020,080	+		BWI76_RS19295	0.77	+0.7
4,020,081	-		BWI76_RS19295	0.77	-0.7
4,020,081	-		BWI76_RS19295	0.77	+0.2
4,020,081	-		BWI76_RS19295	0.77	-2.0
4,020,088	-		BWI76_RS19295	0.78	-0.9
4,020,088	-		BWI76_RS19295	0.78	+1.2
4,020,093	-		BWI76_RS19295	0.78	+0.1
4,020,114	+		BWI76_RS19295	0.81	+0.2
4,020,137	-		BWI76_RS19295	0.84	+0.8
4,020,152	+		BWI76_RS19295	0.86	-0.2
4,020,212	+				-1.0
4,020,236	+				+0.3
4,020,296	-				+0.6
4,020,382	+				+0.6
4,020,382	+				+0.6
4,020,388	-				-1.0
4,020,390	-				-0.4
4,020,590	-				-1.8
4,020,658	+				-0.8
4,020,658	+				+0.3
4,020,662	-				-0.4
4,020,662	-				-1.2
4,020,675	+				-3.3
4,020,688	-				+0.3
4,020,700	-				-1.8
4,020,700	-				+0.9
4,020,731	+				+0.5
4,020,731	+				-0.4
4,020,739	-				+1.0
4,020,748	+				+0.8
4,020,762	+		BWI76_RS19300	0.10	-0.3
4,020,770	+		BWI76_RS19300	0.11	-0.2
4,020,770	+		BWI76_RS19300	0.11	-0.8
4,020,770	+		BWI76_RS19300	0.11	+0.1
4,020,778	-		BWI76_RS19300	0.12	+0.2
4,020,873	+		BWI76_RS19300	0.25	-0.4
4,021,002	-		BWI76_RS19300	0.41	-0.8
4,021,052	-		BWI76_RS19300	0.48	+0.6
4,021,166	-		BWI76_RS19300	0.63	+0.6