Experiment: RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15330 and BWI76_RS15335 overlap by 1 nucleotides BWI76_RS15335 and BWI76_RS15340 are separated by 84 nucleotides
BWI76_RS15330: BWI76_RS15330 - urea ABC transporter permease subunit UrtC, at 3,209,844 to 3,210,917
_RS15330
BWI76_RS15335: BWI76_RS15335 - branched-chain amino acid ABC transporter permease, at 3,210,917 to 3,212,491
_RS15335
BWI76_RS15340: BWI76_RS15340 - urea ABC transporter substrate-binding protein, at 3,212,576 to 3,213,847
_RS15340
Position (kb)
3210
3211
3212
3213 Strain fitness (log2 ratio)
-2
-1
0
1 at 3209.976 kb on + strand, within BWI76_RS15330 at 3209.976 kb on + strand, within BWI76_RS15330 at 3209.979 kb on - strand, within BWI76_RS15330 at 3210.145 kb on + strand, within BWI76_RS15330 at 3210.155 kb on + strand, within BWI76_RS15330 at 3210.155 kb on + strand at 3210.415 kb on + strand, within BWI76_RS15330 at 3210.925 kb on - strand at 3211.111 kb on + strand at 3211.144 kb on + strand, within BWI76_RS15335 at 3211.850 kb on + strand, within BWI76_RS15335 at 3211.885 kb on - strand, within BWI76_RS15335 at 3212.101 kb on + strand, within BWI76_RS15335 at 3212.534 kb on + strand at 3212.758 kb on + strand, within BWI76_RS15340 at 3213.004 kb on - strand, within BWI76_RS15340 at 3213.110 kb on - strand, within BWI76_RS15340 at 3213.476 kb on - strand, within BWI76_RS15340 at 3213.488 kb on - strand, within BWI76_RS15340
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,209,976 + BWI76_RS15330 0.12 +0.8 3,209,976 + BWI76_RS15330 0.12 -1.2 3,209,979 - BWI76_RS15330 0.13 -0.2 3,210,145 + BWI76_RS15330 0.28 -0.9 3,210,155 + BWI76_RS15330 0.29 -0.5 3,210,155 + +0.4 3,210,415 + BWI76_RS15330 0.53 +0.0 3,210,925 - +0.3 3,211,111 + -0.2 3,211,144 + BWI76_RS15335 0.14 +1.1 3,211,850 + BWI76_RS15335 0.59 +1.2 3,211,885 - BWI76_RS15335 0.61 -0.0 3,212,101 + BWI76_RS15335 0.75 +0.8 3,212,534 + -1.1 3,212,758 + BWI76_RS15340 0.14 -2.0 3,213,004 - BWI76_RS15340 0.34 +0.1 3,213,110 - BWI76_RS15340 0.42 +0.4 3,213,476 - BWI76_RS15340 0.71 +0.3 3,213,488 - BWI76_RS15340 0.72 +1.2
Or see this region's nucleotide sequence