Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12220

Experiment: RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
2,554,798	+				-0.4
2,554,860	-				-2.3
2,554,865	-				-1.1
2,554,894	+				-1.5
2,554,929	+				-1.6
2,554,936	+				-0.1
2,554,936	+				-1.3
2,554,978	-		BWI76_RS12210	0.14	-0.6
2,554,985	+		BWI76_RS12210	0.17	-0.2
2,554,992	+		BWI76_RS12210	0.20	-0.3
2,555,000	-		BWI76_RS12210	0.23	+0.1
2,555,000	-		BWI76_RS12210	0.23	-0.1
2,555,000	-		BWI76_RS12210	0.23	-0.9
2,555,037	+		BWI76_RS12210	0.38	-1.0
2,555,045	-				-0.0
2,555,076	+		BWI76_RS12210	0.54	-0.6
2,555,087	+		BWI76_RS12210	0.58	-0.7
2,555,139	-		BWI76_RS12210	0.79	+0.3
2,555,159	+		BWI76_RS12210	0.87	-0.7
2,555,167	-				-0.7
2,555,170	+				-2.2
2,555,170	+				-1.5
2,555,178	-				-2.2
2,555,178	-				-1.0
2,555,178	-				-0.9
2,555,192	-				-0.1
2,555,242	+				-0.6
2,555,270	-		BWI76_RS12215	0.15	-1.2
2,555,312	+		BWI76_RS12215	0.48	-2.4
2,555,312	+		BWI76_RS12215	0.48	-1.5
2,555,320	-		BWI76_RS12215	0.55	-1.9
2,555,329	-		BWI76_RS12215	0.62	-1.2
2,555,342	-		BWI76_RS12215	0.72	-0.7
2,555,353	-		BWI76_RS12215	0.81	-0.8
2,555,354	+		BWI76_RS12215	0.82	-0.3
2,555,362	-		BWI76_RS12215	0.88	-3.7
2,555,372	-				-1.0
2,555,381	+				+3.3
2,555,387	-				-0.4
2,555,416	-				-1.1
2,555,421	-				-2.2
2,555,446	-				-0.6
2,555,470	-				-2.7
2,555,511	-				-2.2
2,555,548	+				+0.4
2,555,548	+				-0.6
2,555,554	-				+0.4
2,555,556	-				-0.2
2,555,561	+				-0.5
2,555,591	+				+1.6
2,555,612	-				-0.3
2,555,628	+				-1.8
2,555,641	+				-0.8
2,555,652	+				-1.0
2,555,694	+				-0.6
2,555,694	+				-1.5
2,555,797	+		BWI76_RS12220	0.13	-1.1
2,555,808	-		BWI76_RS12220	0.17	-1.8
2,555,814	+		BWI76_RS12220	0.20	-3.4
2,555,814	+		BWI76_RS12220	0.20	-2.0
2,555,817	-		BWI76_RS12220	0.21	-2.1
2,555,817	-		BWI76_RS12220	0.21	-2.2
2,555,819	+		BWI76_RS12220	0.22	-0.7
2,555,822	-		BWI76_RS12220	0.23	-0.4
2,555,840	+		BWI76_RS12220	0.31	+1.2
2,555,848	-		BWI76_RS12220	0.34	-1.1
2,555,848	-		BWI76_RS12220	0.34	-3.8
2,555,884	+		BWI76_RS12220	0.49	-0.7
2,555,884	+		BWI76_RS12220	0.49	+1.0
2,555,892	-		BWI76_RS12220	0.53	-0.6
2,555,892	-		BWI76_RS12220	0.53	-1.3
2,555,892	-		BWI76_RS12220	0.53	-0.2
2,555,908	-		BWI76_RS12220	0.59	+1.0
2,555,951	+		BWI76_RS12220	0.77	-0.8
2,555,951	+		BWI76_RS12220	0.77	+0.2
2,555,951	+		BWI76_RS12220	0.77	-1.2
2,555,951	+		BWI76_RS12220	0.77	-1.5
2,555,961	-		BWI76_RS12220	0.81	-1.6
2,556,091	+				-0.3
2,556,091	+				-0.5
2,556,091	+				-2.0
2,556,091	+				-0.6
2,556,091	+				-0.0
2,556,091	+				-0.1
2,556,099	+				+0.5
2,556,099	-				-0.3
2,556,100	+				+1.3
2,556,101	+				-0.7
2,556,101	+				-0.5
2,556,105	+				-1.3
2,556,114	+				-0.7
2,556,114	+				-0.2
2,556,114	+				-2.9
2,556,122	-				-1.3
2,556,137	+				-1.8
2,556,140	-				+1.0
2,556,191	+				+0.1
2,556,195	+				+0.2
2,556,240	+				-0.5
2,556,245	+				-0.3
2,556,250	+				-0.5
2,556,250	+				-1.1
2,556,250	+				-0.8
2,556,250	+				-0.9
2,556,250	+				-0.4
2,556,250	+				+0.7
2,556,250	+				-0.2
2,556,250	+				-2.7
2,556,250	+				-1.0
2,556,250	+				-1.4
2,556,258	-				-1.1
2,556,258	-				-0.7
2,556,258	-				+0.9
2,556,258	-				+0.5
2,556,258	-				-2.0
2,556,258	-				-0.5
2,556,258	-				-0.2
2,556,258	-				+1.0
2,556,260	+				-0.0
2,556,290	-				-1.1
2,556,299	-				-1.4
2,556,301	+				-2.8
2,556,301	+				-1.0
2,556,354	+				+0.1
2,556,354	+				+0.8
2,556,354	+				-0.6
2,556,354	+				-0.0
2,556,360	-				-0.4
2,556,360	-				+0.2
2,556,362	-				-0.8
2,556,362	-				-3.5
2,556,362	-				-1.2
2,556,362	-				+0.2
2,556,362	-				-1.0
2,556,362	-				-1.8
2,556,362	-				-0.6
2,556,362	-				-3.3
2,556,506	+		BWI76_RS12225	0.78	-0.6
2,556,506	+		BWI76_RS12225	0.78	-1.6
2,556,576	+				-2.3
2,556,576	+				-0.5
2,556,579	+				-2.0
2,556,579	+				-0.6
2,556,589	+				-0.6
2,556,589	+				-0.6
2,556,591	-				-0.9
2,556,591	-				-1.3
2,556,592	-				-0.7
2,556,592	-				-1.6
2,556,601	-				-0.7
2,556,621	-				-1.6
2,556,636	+				-0.5
2,556,636	+				-1.0
2,556,658	-				-0.6
2,556,662	+				-0.2
2,556,663	-				-0.1
2,556,686	-				-0.6
2,556,767	+				+0.6
2,556,806	+				+0.1
2,556,808	+				-2.0
2,556,808	+				-0.6
2,556,808	+				-0.4
2,556,808	+				-0.9
2,556,816	-				-3.3
2,556,816	-				-0.9
2,556,840	+				+0.2
2,556,841	+				-0.8
2,556,842	+				-2.1
2,556,843	+				-0.8
2,556,843	-				-1.2
2,556,848	-				-2.9
2,556,867	-				+0.0
2,556,867	-				+0.4
2,556,868	-				-0.4
2,556,870	+				-0.4
2,556,870	+				-1.0
2,556,870	+				+0.8
2,556,870	+				-0.3
2,556,870	+				-1.3
2,556,870	+				-0.1
2,556,878	-				-0.3
2,556,878	-				-0.2
2,556,878	-				-2.0
2,556,878	-				-0.9
2,556,878	-				-0.6
2,556,879	-				-1.7
2,556,886	-				+0.3
2,556,889	-				-1.2
2,556,900	-				-0.9
2,556,907	+				-1.6