Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16300

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,725,926	+		HSERO_RS16295	0.28	+0.1
3,726,174	-		HSERO_RS16295	0.54	-0.5
3,726,260	-		HSERO_RS16295	0.63	-0.9
3,726,516	-				-0.1
3,726,613	-				-0.2
3,726,939	-				+0.8
3,727,138	+		HSERO_RS16300	0.15	+0.3
3,727,154	+		HSERO_RS16300	0.16	-0.5
3,727,154	+		HSERO_RS16300	0.16	-0.8
3,727,455	-		HSERO_RS16300	0.33	+0.2
3,727,471	-		HSERO_RS16300	0.34	+0.0
3,727,478	-		HSERO_RS16300	0.35	-0.3
3,727,501	-		HSERO_RS16300	0.36	-0.6
3,727,841	-		HSERO_RS16300	0.55	-0.6
3,727,979	-		HSERO_RS16300	0.63	+0.7
3,728,133	+		HSERO_RS16300	0.72	+0.1
3,728,155	+		HSERO_RS16300	0.73	+0.3
3,728,168	+		HSERO_RS16300	0.74	+0.9
3,728,173	+		HSERO_RS16300	0.74	-0.4
3,728,352	+		HSERO_RS16300	0.84	-0.7
3,728,470	+				+0.2
3,728,482	+				-0.2
3,728,546	-				-0.4
3,728,593	-				+0.4
3,728,593	-				-0.2
3,728,697	-				-0.9
3,728,789	+				-0.6
3,728,844	-		HSERO_RS16305	0.20	-0.1
3,728,911	+		HSERO_RS16305	0.37	+0.8
3,728,933	-		HSERO_RS16305	0.43	-0.9
3,729,215	+				-0.3
3,729,223	-				-1.1
3,729,242	+				+0.0
3,729,266	-				+0.3
3,729,269	+				+0.7
3,729,382	-				+0.2
3,729,424	-				-0.0
3,729,426	+				+0.6