Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03195 and HSERO_RS03200 are separated by 194 nucleotides HSERO_RS03200 and HSERO_RS03205 are separated by 93 nucleotides
HSERO_RS03195: HSERO_RS03195 - poly(3-hydroxybutyrate) depolymerase, at 698,712 to 699,938
_RS03195
HSERO_RS03200: HSERO_RS03200 - IMP dehydrogenase, at 700,133 to 703,519
_RS03200
HSERO_RS03205: HSERO_RS03205 - hypothetical protein, at 703,613 to 706,114
_RS03205
Position (kb) 700
701
702
703
704 Strain fitness (log2 ratio) -1
0
1 at 699.310 kb on + strand, within HSERO_RS03195 at 699.352 kb on - strand, within HSERO_RS03195 at 699.372 kb on + strand, within HSERO_RS03195 at 699.377 kb on + strand, within HSERO_RS03195 at 699.379 kb on - strand, within HSERO_RS03195 at 699.410 kb on + strand, within HSERO_RS03195 at 699.439 kb on + strand, within HSERO_RS03195 at 699.535 kb on - strand, within HSERO_RS03195 at 699.542 kb on + strand, within HSERO_RS03195 at 699.626 kb on - strand, within HSERO_RS03195 at 699.682 kb on - strand, within HSERO_RS03195 at 699.755 kb on - strand, within HSERO_RS03195 at 699.779 kb on + strand, within HSERO_RS03195 at 699.782 kb on - strand, within HSERO_RS03195 at 699.852 kb on + strand at 700.148 kb on + strand at 700.156 kb on - strand at 700.156 kb on - strand at 700.156 kb on - strand at 700.156 kb on - strand at 700.428 kb on - strand at 700.459 kb on - strand at 700.586 kb on - strand, within HSERO_RS03200 at 700.622 kb on - strand, within HSERO_RS03200 at 700.825 kb on + strand, within HSERO_RS03200 at 700.868 kb on - strand, within HSERO_RS03200 at 700.904 kb on + strand, within HSERO_RS03200 at 700.935 kb on - strand, within HSERO_RS03200 at 701.032 kb on - strand, within HSERO_RS03200 at 701.037 kb on - strand, within HSERO_RS03200 at 701.037 kb on - strand, within HSERO_RS03200 at 701.305 kb on - strand, within HSERO_RS03200 at 701.448 kb on - strand, within HSERO_RS03200 at 701.714 kb on + strand, within HSERO_RS03200 at 701.714 kb on + strand, within HSERO_RS03200 at 701.722 kb on - strand, within HSERO_RS03200 at 701.870 kb on + strand, within HSERO_RS03200 at 701.875 kb on + strand, within HSERO_RS03200 at 701.883 kb on - strand, within HSERO_RS03200 at 701.883 kb on - strand, within HSERO_RS03200 at 701.969 kb on - strand, within HSERO_RS03200 at 702.020 kb on - strand, within HSERO_RS03200 at 702.084 kb on - strand, within HSERO_RS03200 at 702.208 kb on - strand, within HSERO_RS03200 at 702.280 kb on - strand, within HSERO_RS03200 at 702.282 kb on - strand, within HSERO_RS03200 at 702.426 kb on + strand, within HSERO_RS03200 at 702.460 kb on + strand, within HSERO_RS03200 at 702.469 kb on + strand, within HSERO_RS03200 at 702.477 kb on - strand, within HSERO_RS03200 at 702.720 kb on + strand, within HSERO_RS03200 at 702.720 kb on + strand, within HSERO_RS03200 at 702.720 kb on + strand, within HSERO_RS03200 at 702.735 kb on + strand, within HSERO_RS03200 at 702.743 kb on - strand, within HSERO_RS03200 at 702.789 kb on - strand at 703.034 kb on + strand, within HSERO_RS03200 at 703.047 kb on + strand, within HSERO_RS03200 at 703.263 kb on + strand at 703.290 kb on + strand at 703.298 kb on - strand at 703.510 kb on - strand at 703.560 kb on + strand at 703.579 kb on - strand at 703.709 kb on - strand at 703.812 kb on - strand at 703.824 kb on - strand at 703.859 kb on + strand at 703.877 kb on - strand, within HSERO_RS03205 at 704.100 kb on + strand, within HSERO_RS03205 at 704.200 kb on - strand, within HSERO_RS03205 at 704.336 kb on - strand, within HSERO_RS03205 at 704.512 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 699,310 + HSERO_RS03195 0.49 +0.4 699,352 - HSERO_RS03195 0.52 +0.2 699,372 + HSERO_RS03195 0.54 -0.1 699,377 + HSERO_RS03195 0.54 +0.4 699,379 - HSERO_RS03195 0.54 +0.0 699,410 + HSERO_RS03195 0.57 +0.1 699,439 + HSERO_RS03195 0.59 +0.1 699,535 - HSERO_RS03195 0.67 +0.5 699,542 + HSERO_RS03195 0.68 +0.2 699,626 - HSERO_RS03195 0.74 +0.1 699,682 - HSERO_RS03195 0.79 -0.2 699,755 - HSERO_RS03195 0.85 -0.6 699,779 + HSERO_RS03195 0.87 +0.1 699,782 - HSERO_RS03195 0.87 +0.5 699,852 + -0.3 700,148 + +0.1 700,156 - -0.2 700,156 - +0.1 700,156 - +0.3 700,156 - -0.3 700,428 - +0.1 700,459 - -0.1 700,586 - HSERO_RS03200 0.13 -0.3 700,622 - HSERO_RS03200 0.14 +0.8 700,825 + HSERO_RS03200 0.20 +0.1 700,868 - HSERO_RS03200 0.22 +0.5 700,904 + HSERO_RS03200 0.23 +0.0 700,935 - HSERO_RS03200 0.24 +0.2 701,032 - HSERO_RS03200 0.27 -0.2 701,037 - HSERO_RS03200 0.27 -0.2 701,037 - HSERO_RS03200 0.27 -0.8 701,305 - HSERO_RS03200 0.35 -0.2 701,448 - HSERO_RS03200 0.39 +0.2 701,714 + HSERO_RS03200 0.47 +0.1 701,714 + HSERO_RS03200 0.47 -0.0 701,722 - HSERO_RS03200 0.47 +0.4 701,870 + HSERO_RS03200 0.51 +0.5 701,875 + HSERO_RS03200 0.51 +0.1 701,883 - HSERO_RS03200 0.52 +0.4 701,883 - HSERO_RS03200 0.52 -0.4 701,969 - HSERO_RS03200 0.54 +0.5 702,020 - HSERO_RS03200 0.56 -0.5 702,084 - HSERO_RS03200 0.58 -0.4 702,208 - HSERO_RS03200 0.61 +0.3 702,280 - HSERO_RS03200 0.63 +0.1 702,282 - HSERO_RS03200 0.63 -0.2 702,426 + HSERO_RS03200 0.68 -0.5 702,460 + HSERO_RS03200 0.69 -0.0 702,469 + HSERO_RS03200 0.69 -0.7 702,477 - HSERO_RS03200 0.69 -0.3 702,720 + HSERO_RS03200 0.76 -0.6 702,720 + HSERO_RS03200 0.76 +0.1 702,720 + HSERO_RS03200 0.76 -0.2 702,735 + HSERO_RS03200 0.77 -0.8 702,743 - HSERO_RS03200 0.77 +0.2 702,789 - +1.0 703,034 + HSERO_RS03200 0.86 +0.5 703,047 + HSERO_RS03200 0.86 -0.6 703,263 + -0.3 703,290 + -0.1 703,298 - +0.4 703,510 - -0.3 703,560 + -0.3 703,579 - -0.0 703,709 - -0.1 703,812 - +0.3 703,824 - -0.2 703,859 + +0.6 703,877 - HSERO_RS03205 0.11 -0.2 704,100 + HSERO_RS03205 0.19 +0.4 704,200 - HSERO_RS03205 0.23 +0.7 704,336 - HSERO_RS03205 0.29 +0.1 704,512 + -0.8
Or see this region's nucleotide sequence