Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03185 and HSERO_RS03190 are separated by 75 nucleotides HSERO_RS03190 and HSERO_RS03195 are separated by 266 nucleotides HSERO_RS03195 and HSERO_RS03200 are separated by 194 nucleotides
HSERO_RS03185: HSERO_RS03185 - cupin, at 697,270 to 697,713
_RS03185
HSERO_RS03190: HSERO_RS03190 - glutathione S-transferase, at 697,789 to 698,445
_RS03190
HSERO_RS03195: HSERO_RS03195 - poly(3-hydroxybutyrate) depolymerase, at 698,712 to 699,938
_RS03195
HSERO_RS03200: HSERO_RS03200 - IMP dehydrogenase, at 700,133 to 703,519
_RS03200
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1 at 697.876 kb on - strand, within HSERO_RS03190 at 697.876 kb on - strand, within HSERO_RS03190 at 697.902 kb on + strand, within HSERO_RS03190 at 697.992 kb on - strand, within HSERO_RS03190 at 698.246 kb on - strand, within HSERO_RS03190 at 698.273 kb on - strand, within HSERO_RS03190 at 698.512 kb on - strand at 698.729 kb on + strand at 698.877 kb on + strand at 698.900 kb on + strand, within HSERO_RS03195 at 699.310 kb on + strand, within HSERO_RS03195 at 699.352 kb on - strand, within HSERO_RS03195 at 699.372 kb on + strand, within HSERO_RS03195 at 699.377 kb on + strand, within HSERO_RS03195 at 699.379 kb on - strand, within HSERO_RS03195 at 699.410 kb on + strand, within HSERO_RS03195 at 699.439 kb on + strand, within HSERO_RS03195 at 699.535 kb on - strand, within HSERO_RS03195 at 699.542 kb on + strand, within HSERO_RS03195 at 699.626 kb on - strand, within HSERO_RS03195 at 699.682 kb on - strand, within HSERO_RS03195 at 699.755 kb on - strand, within HSERO_RS03195 at 699.779 kb on + strand, within HSERO_RS03195 at 699.782 kb on - strand, within HSERO_RS03195 at 699.852 kb on + strand at 700.148 kb on + strand at 700.156 kb on - strand at 700.156 kb on - strand at 700.156 kb on - strand at 700.156 kb on - strand at 700.428 kb on - strand at 700.459 kb on - strand at 700.586 kb on - strand, within HSERO_RS03200 at 700.622 kb on - strand, within HSERO_RS03200 at 700.825 kb on + strand, within HSERO_RS03200 at 700.868 kb on - strand, within HSERO_RS03200 at 700.904 kb on + strand, within HSERO_RS03200 at 700.935 kb on - strand, within HSERO_RS03200
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 697,876 - HSERO_RS03190 0.13 -2.3 697,876 - HSERO_RS03190 0.13 -1.8 697,902 + HSERO_RS03190 0.17 -0.6 697,992 - HSERO_RS03190 0.31 +0.1 698,246 - HSERO_RS03190 0.70 -2.3 698,273 - HSERO_RS03190 0.74 +0.9 698,512 - +0.4 698,729 + -1.3 698,877 + +0.8 698,900 + HSERO_RS03195 0.15 -0.1 699,310 + HSERO_RS03195 0.49 +0.4 699,352 - HSERO_RS03195 0.52 +0.2 699,372 + HSERO_RS03195 0.54 -0.1 699,377 + HSERO_RS03195 0.54 +0.4 699,379 - HSERO_RS03195 0.54 +0.0 699,410 + HSERO_RS03195 0.57 +0.1 699,439 + HSERO_RS03195 0.59 +0.1 699,535 - HSERO_RS03195 0.67 +0.5 699,542 + HSERO_RS03195 0.68 +0.2 699,626 - HSERO_RS03195 0.74 +0.1 699,682 - HSERO_RS03195 0.79 -0.2 699,755 - HSERO_RS03195 0.85 -0.6 699,779 + HSERO_RS03195 0.87 +0.1 699,782 - HSERO_RS03195 0.87 +0.5 699,852 + -0.3 700,148 + +0.1 700,156 - -0.2 700,156 - +0.1 700,156 - +0.3 700,156 - -0.3 700,428 - +0.1 700,459 - -0.1 700,586 - HSERO_RS03200 0.13 -0.3 700,622 - HSERO_RS03200 0.14 +0.8 700,825 + HSERO_RS03200 0.20 +0.1 700,868 - HSERO_RS03200 0.22 +0.5 700,904 + HSERO_RS03200 0.23 +0.0 700,935 - HSERO_RS03200 0.24 +0.2
Or see this region's nucleotide sequence