Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03180 and HSERO_RS03185 are separated by 268 nucleotides HSERO_RS03185 and HSERO_RS03190 are separated by 75 nucleotides HSERO_RS03190 and HSERO_RS03195 are separated by 266 nucleotides
HSERO_RS03180: HSERO_RS03180 - hypothetical protein, at 695,574 to 697,001
_RS03180
HSERO_RS03185: HSERO_RS03185 - cupin, at 697,270 to 697,713
_RS03185
HSERO_RS03190: HSERO_RS03190 - glutathione S-transferase, at 697,789 to 698,445
_RS03190
HSERO_RS03195: HSERO_RS03195 - poly(3-hydroxybutyrate) depolymerase, at 698,712 to 699,938
_RS03195
Position (kb) 697
698 Strain fitness (log2 ratio) -2
-1
0
1 at 696.271 kb on - strand, within HSERO_RS03180 at 696.429 kb on - strand, within HSERO_RS03180 at 696.440 kb on + strand, within HSERO_RS03180 at 696.440 kb on + strand, within HSERO_RS03180 at 696.503 kb on + strand, within HSERO_RS03180 at 696.523 kb on + strand, within HSERO_RS03180 at 696.533 kb on + strand, within HSERO_RS03180 at 696.728 kb on - strand, within HSERO_RS03180 at 696.729 kb on - strand, within HSERO_RS03180 at 696.759 kb on + strand, within HSERO_RS03180 at 696.827 kb on - strand, within HSERO_RS03180 at 696.941 kb on - strand at 697.235 kb on + strand at 697.307 kb on - strand at 697.549 kb on - strand, within HSERO_RS03185 at 697.706 kb on + strand at 697.876 kb on - strand, within HSERO_RS03190 at 697.876 kb on - strand, within HSERO_RS03190 at 697.902 kb on + strand, within HSERO_RS03190 at 697.992 kb on - strand, within HSERO_RS03190 at 698.246 kb on - strand, within HSERO_RS03190 at 698.273 kb on - strand, within HSERO_RS03190 at 698.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 696,271 - HSERO_RS03180 0.49 -0.9 696,429 - HSERO_RS03180 0.60 +0.2 696,440 + HSERO_RS03180 0.61 -0.4 696,440 + HSERO_RS03180 0.61 -0.1 696,503 + HSERO_RS03180 0.65 +0.1 696,523 + HSERO_RS03180 0.66 -0.2 696,533 + HSERO_RS03180 0.67 -0.2 696,728 - HSERO_RS03180 0.81 +0.9 696,729 - HSERO_RS03180 0.81 +0.6 696,759 + HSERO_RS03180 0.83 +0.5 696,827 - HSERO_RS03180 0.88 +0.0 696,941 - +0.1 697,235 + +0.5 697,307 - -0.3 697,549 - HSERO_RS03185 0.63 +0.7 697,706 + -0.3 697,876 - HSERO_RS03190 0.13 -2.3 697,876 - HSERO_RS03190 0.13 -1.8 697,902 + HSERO_RS03190 0.17 -0.6 697,992 - HSERO_RS03190 0.31 +0.1 698,246 - HSERO_RS03190 0.70 -2.3 698,273 - HSERO_RS03190 0.74 +0.9 698,512 - +0.4
Or see this region's nucleotide sequence