Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24915 and BWI76_RS24920 overlap by 43 nucleotides BWI76_RS24920 and BWI76_RS24925 are separated by 22 nucleotides BWI76_RS24925 and BWI76_RS24930 are separated by 9 nucleotides
BWI76_RS24915: BWI76_RS24915 - penicillin-binding protein activator, at 5,191,438 to 5,193,519
_RS24915
BWI76_RS24920: BWI76_RS24920 - YraN family protein, at 5,193,477 to 5,193,863
_RS24920
BWI76_RS24925: BWI76_RS24925 - DnaA initiator-associating protein DiaA, at 5,193,886 to 5,194,476
_RS24925
BWI76_RS24930: BWI76_RS24930 - osmotically-inducible protein OsmY, at 5,194,486 to 5,195,061
_RS24930
Position (kb) 5193
5194 Strain fitness (log2 ratio) -2
-1
0
1 at 5192.563 kb on - strand, within BWI76_RS24915 at 5192.681 kb on - strand, within BWI76_RS24915 at 5192.703 kb on + strand, within BWI76_RS24915 at 5192.833 kb on + strand, within BWI76_RS24915 at 5193.028 kb on + strand, within BWI76_RS24915 at 5193.028 kb on + strand, within BWI76_RS24915 at 5193.028 kb on + strand, within BWI76_RS24915 at 5193.036 kb on - strand, within BWI76_RS24915 at 5193.040 kb on + strand, within BWI76_RS24915 at 5193.040 kb on + strand, within BWI76_RS24915 at 5193.041 kb on - strand, within BWI76_RS24915 at 5193.048 kb on - strand, within BWI76_RS24915 at 5193.158 kb on - strand, within BWI76_RS24915 at 5193.170 kb on + strand, within BWI76_RS24915 at 5193.170 kb on + strand, within BWI76_RS24915 at 5193.172 kb on + strand, within BWI76_RS24915 at 5193.207 kb on - strand, within BWI76_RS24915 at 5193.323 kb on + strand at 5193.408 kb on - strand at 5193.412 kb on + strand at 5193.445 kb on + strand at 5193.636 kb on + strand, within BWI76_RS24920 at 5193.745 kb on - strand, within BWI76_RS24920 at 5193.807 kb on + strand, within BWI76_RS24920 at 5194.007 kb on - strand, within BWI76_RS24925 at 5194.186 kb on + strand, within BWI76_RS24925 at 5194.314 kb on - strand, within BWI76_RS24925 at 5194.493 kb on - strand at 5194.610 kb on + strand, within BWI76_RS24930 at 5194.610 kb on + strand, within BWI76_RS24930 at 5194.722 kb on - strand, within BWI76_RS24930 at 5194.745 kb on - strand, within BWI76_RS24930 at 5194.847 kb on - strand, within BWI76_RS24930
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 5,192,563 - BWI76_RS24915 0.54 +0.2 5,192,681 - BWI76_RS24915 0.60 +0.4 5,192,703 + BWI76_RS24915 0.61 -0.7 5,192,833 + BWI76_RS24915 0.67 +0.3 5,193,028 + BWI76_RS24915 0.76 -0.5 5,193,028 + BWI76_RS24915 0.76 +0.2 5,193,028 + BWI76_RS24915 0.76 -0.6 5,193,036 - BWI76_RS24915 0.77 +0.5 5,193,040 + BWI76_RS24915 0.77 +0.7 5,193,040 + BWI76_RS24915 0.77 +0.3 5,193,041 - BWI76_RS24915 0.77 +1.0 5,193,048 - BWI76_RS24915 0.77 -0.0 5,193,158 - BWI76_RS24915 0.83 +0.8 5,193,170 + BWI76_RS24915 0.83 +0.3 5,193,170 + BWI76_RS24915 0.83 -1.8 5,193,172 + BWI76_RS24915 0.83 +1.1 5,193,207 - BWI76_RS24915 0.85 +0.5 5,193,323 + -0.2 5,193,408 - -0.2 5,193,412 + +0.4 5,193,445 + +0.5 5,193,636 + BWI76_RS24920 0.41 -1.2 5,193,745 - BWI76_RS24920 0.69 -2.1 5,193,807 + BWI76_RS24920 0.85 -0.4 5,194,007 - BWI76_RS24925 0.20 +0.9 5,194,186 + BWI76_RS24925 0.51 -1.5 5,194,314 - BWI76_RS24925 0.72 -1.6 5,194,493 - +0.9 5,194,610 + BWI76_RS24930 0.22 -0.0 5,194,610 + BWI76_RS24930 0.22 -1.1 5,194,722 - BWI76_RS24930 0.41 +0.7 5,194,745 - BWI76_RS24930 0.45 +0.5 5,194,847 - BWI76_RS24930 0.63 +1.0
Or see this region's nucleotide sequence