Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24605 and BWI76_RS24610 are separated by 66 nucleotides BWI76_RS24610 and BWI76_RS24615 are separated by 280 nucleotides
BWI76_RS24605: BWI76_RS24605 - dihydroxyacetone kinase subunit DhaM, at 5,128,130 to 5,129,551
_RS24605
BWI76_RS24610: BWI76_RS24610 - dihydroxyacetone kinase, at 5,129,618 to 5,131,267
_RS24610
BWI76_RS24615: BWI76_RS24615 - siderophore-interacting protein, at 5,131,548 to 5,132,321
_RS24615
Position (kb) 5129
5130
5131
5132 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5128.650 kb on + strand, within BWI76_RS24605 at 5128.676 kb on + strand, within BWI76_RS24605 at 5128.773 kb on + strand, within BWI76_RS24605 at 5128.773 kb on + strand, within BWI76_RS24605 at 5128.781 kb on - strand, within BWI76_RS24605 at 5128.918 kb on + strand, within BWI76_RS24605 at 5128.931 kb on - strand, within BWI76_RS24605 at 5129.094 kb on - strand, within BWI76_RS24605 at 5129.143 kb on - strand, within BWI76_RS24605 at 5129.226 kb on + strand, within BWI76_RS24605 at 5129.280 kb on + strand, within BWI76_RS24605 at 5129.295 kb on + strand, within BWI76_RS24605 at 5129.311 kb on + strand, within BWI76_RS24605 at 5129.321 kb on + strand, within BWI76_RS24605 at 5129.391 kb on - strand, within BWI76_RS24605 at 5129.391 kb on - strand, within BWI76_RS24605 at 5129.391 kb on - strand, within BWI76_RS24605 at 5129.405 kb on - strand, within BWI76_RS24605 at 5129.507 kb on + strand at 5129.577 kb on - strand at 5129.710 kb on + strand at 5130.313 kb on - strand, within BWI76_RS24610 at 5130.313 kb on - strand, within BWI76_RS24610 at 5130.313 kb on - strand, within BWI76_RS24610 at 5130.313 kb on - strand, within BWI76_RS24610 at 5130.346 kb on + strand, within BWI76_RS24610 at 5130.574 kb on - strand, within BWI76_RS24610 at 5130.611 kb on - strand, within BWI76_RS24610 at 5130.874 kb on + strand, within BWI76_RS24610 at 5131.315 kb on + strand at 5131.714 kb on + strand, within BWI76_RS24615 at 5131.715 kb on + strand, within BWI76_RS24615 at 5131.716 kb on + strand, within BWI76_RS24615 at 5131.722 kb on - strand, within BWI76_RS24615 at 5131.722 kb on - strand at 5131.727 kb on - strand, within BWI76_RS24615 at 5131.806 kb on + strand, within BWI76_RS24615 at 5131.887 kb on - strand, within BWI76_RS24615 at 5132.048 kb on - strand, within BWI76_RS24615 at 5132.058 kb on - strand, within BWI76_RS24615 at 5132.215 kb on - strand, within BWI76_RS24615
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 5,128,650 + BWI76_RS24605 0.37 +0.0 5,128,676 + BWI76_RS24605 0.38 -1.0 5,128,773 + BWI76_RS24605 0.45 -0.6 5,128,773 + BWI76_RS24605 0.45 -4.3 5,128,781 - BWI76_RS24605 0.46 +1.0 5,128,918 + BWI76_RS24605 0.55 -2.4 5,128,931 - BWI76_RS24605 0.56 +0.3 5,129,094 - BWI76_RS24605 0.68 -1.3 5,129,143 - BWI76_RS24605 0.71 -2.1 5,129,226 + BWI76_RS24605 0.77 -0.6 5,129,280 + BWI76_RS24605 0.81 -2.4 5,129,295 + BWI76_RS24605 0.82 +1.0 5,129,311 + BWI76_RS24605 0.83 -0.6 5,129,321 + BWI76_RS24605 0.84 +0.2 5,129,391 - BWI76_RS24605 0.89 -3.4 5,129,391 - BWI76_RS24605 0.89 -0.6 5,129,391 - BWI76_RS24605 0.89 +1.0 5,129,405 - BWI76_RS24605 0.90 +1.0 5,129,507 + -2.4 5,129,577 - -1.4 5,129,710 + -1.3 5,130,313 - BWI76_RS24610 0.42 -1.0 5,130,313 - BWI76_RS24610 0.42 +1.0 5,130,313 - BWI76_RS24610 0.42 +0.9 5,130,313 - BWI76_RS24610 0.42 -0.1 5,130,346 + BWI76_RS24610 0.44 +0.0 5,130,574 - BWI76_RS24610 0.58 -3.5 5,130,611 - BWI76_RS24610 0.60 -0.3 5,130,874 + BWI76_RS24610 0.76 +1.0 5,131,315 + -0.2 5,131,714 + BWI76_RS24615 0.21 -0.6 5,131,715 + BWI76_RS24615 0.22 -0.2 5,131,716 + BWI76_RS24615 0.22 +3.0 5,131,722 - BWI76_RS24615 0.22 -0.6 5,131,722 - +1.6 5,131,727 - BWI76_RS24615 0.23 +0.1 5,131,806 + BWI76_RS24615 0.33 +0.1 5,131,887 - BWI76_RS24615 0.44 -1.6 5,132,048 - BWI76_RS24615 0.65 +0.1 5,132,058 - BWI76_RS24615 0.66 +0.5 5,132,215 - BWI76_RS24615 0.86 +0.7
Or see this region's nucleotide sequence