Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21065 and BWI76_RS21070 are separated by 114 nucleotides BWI76_RS21070 and BWI76_RS21075 are separated by 10 nucleotides BWI76_RS21075 and BWI76_RS21080 are separated by 34 nucleotides
BWI76_RS21065: BWI76_RS21065 - ribosome biogenesis GTPase Der, at 4,406,446 to 4,407,924
_RS21065
BWI76_RS21070: BWI76_RS21070 - outer membrane protein assembly factor BamB, at 4,408,039 to 4,409,217
_RS21070
BWI76_RS21075: BWI76_RS21075 - membrane protein, at 4,409,228 to 4,409,848
_RS21075
BWI76_RS21080: BWI76_RS21080 - histidine--tRNA ligase, at 4,409,883 to 4,411,157
_RS21080
Position (kb) 4408
4409
4410 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4408.334 kb on - strand, within BWI76_RS21070 at 4408.461 kb on - strand, within BWI76_RS21070 at 4409.039 kb on - strand, within BWI76_RS21070 at 4409.392 kb on - strand, within BWI76_RS21075 at 4409.438 kb on - strand, within BWI76_RS21075 at 4409.713 kb on - strand, within BWI76_RS21075 at 4409.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,408,334 - BWI76_RS21070 0.25 -2.0 4,408,461 - BWI76_RS21070 0.36 +1.0 4,409,039 - BWI76_RS21070 0.85 -2.0 4,409,392 - BWI76_RS21075 0.26 -1.0 4,409,438 - BWI76_RS21075 0.34 -0.5 4,409,713 - BWI76_RS21075 0.78 +3.3 4,409,894 - +0.2
Or see this region's nucleotide sequence