Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20775 and BWI76_RS20780 are separated by 170 nucleotides BWI76_RS20780 and BWI76_RS20785 overlap by 11 nucleotides BWI76_RS20785 and BWI76_RS20790 are separated by 10 nucleotides
BWI76_RS20775: BWI76_RS20775 - ethanolamine utilization protein EutH, at 4,342,470 to 4,343,702
_RS20775
BWI76_RS20780: BWI76_RS20780 - alcohol dehydrogenase EutG, at 4,343,873 to 4,345,060
_RS20780
BWI76_RS20785: BWI76_RS20785 - ethanolamine utilization protein EutJ, at 4,345,050 to 4,345,889
_RS20785
BWI76_RS20790: BWI76_RS20790 - aldehyde dehydrogenase, at 4,345,900 to 4,347,303
_RS20790
Position (kb) 4343
4344
4345
4346 Strain fitness (log2 ratio) -1
0
1 at 4343.138 kb on - strand, within BWI76_RS20775 at 4343.138 kb on - strand, within BWI76_RS20775 at 4343.335 kb on + strand, within BWI76_RS20775 at 4343.343 kb on - strand, within BWI76_RS20775 at 4343.551 kb on - strand, within BWI76_RS20775 at 4343.655 kb on - strand at 4343.675 kb on - strand at 4343.764 kb on + strand at 4343.826 kb on + strand at 4343.859 kb on + strand at 4344.162 kb on + strand, within BWI76_RS20780 at 4344.162 kb on + strand, within BWI76_RS20780 at 4344.170 kb on - strand, within BWI76_RS20780 at 4344.227 kb on + strand, within BWI76_RS20780 at 4344.306 kb on + strand, within BWI76_RS20780 at 4344.398 kb on + strand, within BWI76_RS20780 at 4344.467 kb on + strand, within BWI76_RS20780 at 4344.669 kb on - strand, within BWI76_RS20780 at 4344.669 kb on - strand, within BWI76_RS20780 at 4344.876 kb on - strand, within BWI76_RS20780 at 4344.993 kb on + strand at 4345.529 kb on + strand, within BWI76_RS20785 at 4345.579 kb on - strand at 4345.916 kb on + strand at 4346.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,343,138 - BWI76_RS20775 0.54 +0.2 4,343,138 - BWI76_RS20775 0.54 +0.6 4,343,335 + BWI76_RS20775 0.70 +1.5 4,343,343 - BWI76_RS20775 0.71 +0.9 4,343,551 - BWI76_RS20775 0.88 +0.8 4,343,655 - -1.7 4,343,675 - +0.3 4,343,764 + -0.6 4,343,826 + +0.4 4,343,859 + +0.4 4,344,162 + BWI76_RS20780 0.24 +1.3 4,344,162 + BWI76_RS20780 0.24 -0.9 4,344,170 - BWI76_RS20780 0.25 +0.3 4,344,227 + BWI76_RS20780 0.30 +0.3 4,344,306 + BWI76_RS20780 0.36 +0.5 4,344,398 + BWI76_RS20780 0.44 +0.4 4,344,467 + BWI76_RS20780 0.50 +1.1 4,344,669 - BWI76_RS20780 0.67 -0.1 4,344,669 - BWI76_RS20780 0.67 +1.4 4,344,876 - BWI76_RS20780 0.84 +0.9 4,344,993 + -0.8 4,345,529 + BWI76_RS20785 0.57 +0.8 4,345,579 - -1.4 4,345,916 + -0.3 4,346,010 - +1.4
Or see this region's nucleotide sequence