Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15690 and BWI76_RS15695 overlap by 4 nucleotides BWI76_RS15695 and BWI76_RS15700 overlap by 4 nucleotides BWI76_RS15700 and BWI76_RS15705 overlap by 4 nucleotides BWI76_RS15705 and BWI76_RS15710 are separated by 643 nucleotides
BWI76_RS15690: BWI76_RS15690 - hypothetical protein, at 3,275,790 to 3,276,065
_RS15690
BWI76_RS15695: BWI76_RS15695 - hypothetical protein, at 3,276,062 to 3,276,406
_RS15695
BWI76_RS15700: BWI76_RS15700 - hypothetical protein, at 3,276,403 to 3,276,945
_RS15700
BWI76_RS15705: BWI76_RS15705 - putative holin protein, at 3,276,942 to 3,277,253
_RS15705
BWI76_RS15710: BWI76_RS15710 - phage antitermination protein Q, at 3,277,897 to 3,278,586
_RS15710
Position (kb)
3276
3277
3278 Strain fitness (log2 ratio)
-2
-1
0
1 at 3275.959 kb on + strand, within BWI76_RS15690 at 3276.178 kb on + strand, within BWI76_RS15695 at 3276.218 kb on - strand, within BWI76_RS15695 at 3276.253 kb on - strand at 3276.255 kb on - strand, within BWI76_RS15695 at 3276.538 kb on - strand, within BWI76_RS15700 at 3276.543 kb on - strand, within BWI76_RS15700 at 3276.606 kb on - strand, within BWI76_RS15700 at 3276.636 kb on + strand, within BWI76_RS15700 at 3276.659 kb on + strand, within BWI76_RS15700 at 3276.826 kb on - strand, within BWI76_RS15700 at 3276.971 kb on + strand at 3276.989 kb on - strand, within BWI76_RS15705 at 3276.999 kb on - strand, within BWI76_RS15705 at 3277.031 kb on - strand, within BWI76_RS15705 at 3277.062 kb on + strand, within BWI76_RS15705 at 3277.212 kb on - strand, within BWI76_RS15705 at 3277.243 kb on + strand at 3277.251 kb on - strand at 3277.300 kb on + strand at 3277.307 kb on - strand at 3277.308 kb on - strand at 3277.434 kb on + strand at 3277.491 kb on + strand at 3277.491 kb on + strand at 3277.562 kb on - strand at 3277.582 kb on + strand at 3277.616 kb on - strand at 3277.778 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,275,959 + BWI76_RS15690 0.61 -0.6 3,276,178 + BWI76_RS15695 0.34 -1.0 3,276,218 - BWI76_RS15695 0.45 +0.4 3,276,253 - -0.6 3,276,255 - BWI76_RS15695 0.56 -0.1 3,276,538 - BWI76_RS15700 0.25 -0.3 3,276,543 - BWI76_RS15700 0.26 -0.9 3,276,606 - BWI76_RS15700 0.37 -1.1 3,276,636 + BWI76_RS15700 0.43 -0.7 3,276,659 + BWI76_RS15700 0.47 +0.2 3,276,826 - BWI76_RS15700 0.78 +0.3 3,276,971 + -2.0 3,276,989 - BWI76_RS15705 0.15 -2.3 3,276,999 - BWI76_RS15705 0.18 +0.2 3,277,031 - BWI76_RS15705 0.29 -0.6 3,277,062 + BWI76_RS15705 0.38 -1.1 3,277,212 - BWI76_RS15705 0.87 -1.2 3,277,243 + -0.3 3,277,251 - -1.0 3,277,300 + -0.0 3,277,307 - -0.8 3,277,308 - -0.6 3,277,434 + -0.5 3,277,491 + +1.2 3,277,491 + +0.2 3,277,562 - -0.9 3,277,582 + -0.6 3,277,616 - -0.3 3,277,778 + -1.6
Or see this region's nucleotide sequence