Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14050 and BWI76_RS14055 are separated by 184 nucleotides BWI76_RS14055 and BWI76_RS14060 are separated by 168 nucleotides
BWI76_RS14050: BWI76_RS14050 - AP endonuclease, family 2, at 2,936,169 to 2,937,092
_RS14050
BWI76_RS14055: BWI76_RS14055 - LacI family transcriptional regulator, at 2,937,277 to 2,938,311
_RS14055
BWI76_RS14060: BWI76_RS14060 - secretory lipase, at 2,938,480 to 2,939,622
_RS14060
Position (kb)
2937
2938
2939 Strain fitness (log2 ratio)
-1
0
1 at 2936.408 kb on + strand, within BWI76_RS14050 at 2936.855 kb on + strand, within BWI76_RS14050 at 2937.427 kb on + strand, within BWI76_RS14055 at 2937.617 kb on - strand, within BWI76_RS14055 at 2937.626 kb on + strand, within BWI76_RS14055 at 2937.671 kb on - strand at 2937.853 kb on + strand, within BWI76_RS14055 at 2937.856 kb on + strand, within BWI76_RS14055 at 2937.863 kb on - strand, within BWI76_RS14055 at 2937.888 kb on - strand, within BWI76_RS14055 at 2938.249 kb on - strand at 2938.421 kb on + strand at 2938.452 kb on - strand at 2938.492 kb on - strand at 2938.525 kb on - strand at 2938.801 kb on - strand, within BWI76_RS14060 at 2938.858 kb on - strand, within BWI76_RS14060 at 2939.004 kb on + strand, within BWI76_RS14060 at 2939.229 kb on + strand, within BWI76_RS14060
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,936,408 + BWI76_RS14050 0.26 -0.9 2,936,855 + BWI76_RS14050 0.74 +0.4 2,937,427 + BWI76_RS14055 0.14 +0.4 2,937,617 - BWI76_RS14055 0.33 -0.3 2,937,626 + BWI76_RS14055 0.34 +0.6 2,937,671 - -1.2 2,937,853 + BWI76_RS14055 0.56 +1.4 2,937,856 + BWI76_RS14055 0.56 +1.6 2,937,863 - BWI76_RS14055 0.57 +0.8 2,937,888 - BWI76_RS14055 0.59 +1.3 2,938,249 - -0.7 2,938,421 + -0.1 2,938,452 - -0.3 2,938,492 - +0.1 2,938,525 - -1.0 2,938,801 - BWI76_RS14060 0.28 +0.8 2,938,858 - BWI76_RS14060 0.33 -0.3 2,939,004 + BWI76_RS14060 0.46 +0.7 2,939,229 + BWI76_RS14060 0.66 +1.1
Or see this region's nucleotide sequence