Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11820 and BWI76_RS11825 are separated by 121 nucleotides BWI76_RS11825 and BWI76_RS11830 are separated by 154 nucleotides
BWI76_RS11820: BWI76_RS11820 - short-chain dehydrogenase/reductase SDR, at 2,485,567 to 2,486,271
_RS11820
BWI76_RS11825: BWI76_RS11825 - LysR family transcriptional regulator, at 2,486,393 to 2,487,292
_RS11825
BWI76_RS11830: BWI76_RS11830 - hypothetical protein, at 2,487,447 to 2,488,394
_RS11830
Position (kb)
2486
2487
2488 Strain fitness (log2 ratio)
-1
0
1 at 2485.498 kb on - strand at 2486.168 kb on + strand, within BWI76_RS11820 at 2486.215 kb on - strand at 2486.317 kb on + strand at 2486.328 kb on + strand at 2486.423 kb on + strand at 2486.545 kb on + strand, within BWI76_RS11825 at 2486.553 kb on - strand, within BWI76_RS11825 at 2486.633 kb on + strand, within BWI76_RS11825 at 2486.977 kb on + strand, within BWI76_RS11825 at 2487.534 kb on - strand at 2487.607 kb on - strand, within BWI76_RS11830 at 2487.738 kb on - strand, within BWI76_RS11830 at 2487.964 kb on + strand, within BWI76_RS11830 at 2488.110 kb on + strand, within BWI76_RS11830 at 2488.133 kb on + strand, within BWI76_RS11830 at 2488.242 kb on + strand, within BWI76_RS11830
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,485,498 - +0.3 2,486,168 + BWI76_RS11820 0.85 -0.5 2,486,215 - +0.2 2,486,317 + -0.0 2,486,328 + +0.8 2,486,423 + +0.6 2,486,545 + BWI76_RS11825 0.17 +0.6 2,486,553 - BWI76_RS11825 0.18 +0.5 2,486,633 + BWI76_RS11825 0.27 +0.8 2,486,977 + BWI76_RS11825 0.65 +1.1 2,487,534 - +0.7 2,487,607 - BWI76_RS11830 0.17 +0.4 2,487,738 - BWI76_RS11830 0.31 +0.9 2,487,964 + BWI76_RS11830 0.55 +0.8 2,488,110 + BWI76_RS11830 0.70 +1.7 2,488,133 + BWI76_RS11830 0.72 -0.1 2,488,242 + BWI76_RS11830 0.84 +0.4
Or see this region's nucleotide sequence