Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00790 and BWI76_RS00795 are separated by 39 nucleotides BWI76_RS00795 and BWI76_RS00800 are separated by 91 nucleotides
BWI76_RS00790: BWI76_RS00790 - bifunctional aspartokinase II/homoserine dehydrogenase II, at 160,976 to 163,408
_RS00790
BWI76_RS00795: BWI76_RS00795 - carboxymuconolactone decarboxylase, at 163,448 to 163,819
_RS00795
BWI76_RS00800: BWI76_RS00800 - LysR family transcriptional regulator, at 163,911 to 164,816
_RS00800
Position (kb) 163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 162.769 kb on + strand, within BWI76_RS00790 at 162.812 kb on - strand, within BWI76_RS00790 at 162.843 kb on + strand, within BWI76_RS00790 at 162.911 kb on - strand, within BWI76_RS00790 at 163.095 kb on + strand, within BWI76_RS00790 at 163.183 kb on + strand at 163.191 kb on - strand at 163.379 kb on + strand at 163.613 kb on - strand, within BWI76_RS00795 at 163.650 kb on - strand, within BWI76_RS00795 at 163.740 kb on - strand, within BWI76_RS00795 at 163.778 kb on + strand, within BWI76_RS00795 at 163.799 kb on + strand at 163.822 kb on - strand at 163.839 kb on - strand at 163.866 kb on + strand at 163.889 kb on - strand at 164.060 kb on + strand at 164.154 kb on + strand, within BWI76_RS00800 at 164.233 kb on + strand, within BWI76_RS00800 at 164.241 kb on - strand, within BWI76_RS00800 at 164.241 kb on - strand, within BWI76_RS00800 at 164.464 kb on + strand, within BWI76_RS00800 at 164.734 kb on - strand at 164.739 kb on - strand at 164.745 kb on - strand at 164.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 162,769 + BWI76_RS00790 0.74 +0.5 162,812 - BWI76_RS00790 0.75 -2.3 162,843 + BWI76_RS00790 0.77 -0.3 162,911 - BWI76_RS00790 0.80 -0.1 163,095 + BWI76_RS00790 0.87 +0.2 163,183 + -0.4 163,191 - +0.6 163,379 + +1.2 163,613 - BWI76_RS00795 0.44 -1.6 163,650 - BWI76_RS00795 0.54 -2.8 163,740 - BWI76_RS00795 0.78 -1.0 163,778 + BWI76_RS00795 0.89 -0.3 163,799 + -0.9 163,822 - +0.4 163,839 - +0.2 163,866 + +0.8 163,889 - +0.5 164,060 + +1.8 164,154 + BWI76_RS00800 0.27 -0.7 164,233 + BWI76_RS00800 0.36 +0.6 164,241 - BWI76_RS00800 0.36 +0.4 164,241 - BWI76_RS00800 0.36 +0.7 164,464 + BWI76_RS00800 0.61 +0.1 164,734 - +0.0 164,739 - -1.5 164,745 - +0.8 164,791 - -0.2
Or see this region's nucleotide sequence