Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29735

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
6,607,039	-		PFLU_RS29730	0.49	+0.8
6,607,390	+		PFLU_RS29730	0.76	+0.3
6,607,390	+		PFLU_RS29730	0.76	-1.0
6,607,390	+		PFLU_RS29730	0.76	+0.2
6,607,390	+		PFLU_RS29730	0.76	-0.8
6,607,390	+		PFLU_RS29730	0.76	+1.8
6,607,390	+		PFLU_RS29730	0.76	+0.5
6,607,390	+		PFLU_RS29730	0.76	-0.5
6,607,390	+		PFLU_RS29730	0.76	+0.1
6,607,390	+		PFLU_RS29730	0.76	+0.3
6,607,390	+		PFLU_RS29730	0.76	+0.7
6,607,391	-		PFLU_RS29730	0.76	+0.7
6,607,391	-		PFLU_RS29730	0.76	+0.5
6,607,391	-		PFLU_RS29730	0.76	+0.4
6,607,391	-		PFLU_RS29730	0.76	+0.1
6,607,391	-		PFLU_RS29730	0.76	-1.8
6,607,391	-		PFLU_RS29730	0.76	-0.9
6,607,391	-		PFLU_RS29730	0.76	-2.6
6,607,391	-		PFLU_RS29730	0.76	+0.3
6,607,391	-		PFLU_RS29730	0.76	-1.4
6,607,592	+				+0.8
6,607,592	+				+0.3
6,607,593	-				+2.3
6,607,593	-				-2.2
6,607,593	-				-0.3
6,607,641	+				-0.2
6,607,641	+				+1.3
6,607,641	+				+0.0
6,607,641	+				-1.0
6,607,641	+				-0.0
6,607,641	+				-0.4
6,607,642	-				-0.9
6,607,642	-				+0.2
6,607,642	-				+0.5
6,607,642	-				-0.2
6,607,642	-				+0.7
6,607,642	-				-2.7
6,607,642	-				-1.0
6,607,642	-				-1.2
6,607,719	+				+0.1
6,607,727	+				+1.5
6,607,727	+				+1.0
6,607,727	+				-0.7
6,607,727	+				-0.2
6,607,727	+				+1.3
6,607,727	+				+0.8
6,607,727	+				+1.1
6,607,727	+				-1.0
6,607,727	+				+0.3
6,607,727	+				-0.3
6,607,727	+				-1.6
6,607,727	+				+0.7
6,607,728	-				-2.4
6,607,728	-				-1.2
6,607,728	-				+1.0
6,607,728	-				-1.0
6,607,728	-				+0.2
6,607,728	-				-0.9
6,607,728	-				-1.4
6,607,728	-				+0.0
6,607,728	-				-0.2
6,607,728	-				+0.1
6,607,770	+				-0.2
6,607,770	+				-0.1
6,607,770	+				+2.5
6,607,770	+				-1.5
6,607,770	+				+2.3
6,607,770	+				-0.7
6,607,770	+				-0.6
6,607,770	+				+1.9
6,607,770	+				-0.2
6,607,770	+				-1.0
6,607,770	+				-0.2
6,607,770	+				-0.5
6,607,770	+				+0.5
6,607,770	+				+1.0
6,607,770	+				+0.2
6,607,770	+				-0.0
6,607,770	+				+1.8
6,607,771	-				-0.5
6,607,771	-				-0.8
6,607,771	-				-0.8
6,607,771	-				-1.2
6,607,771	-				-0.0
6,607,771	-				+1.2
6,607,771	-				+1.2
6,607,771	-				-0.7
6,607,771	-				+0.0
6,607,771	-				+1.3
6,607,771	-				-0.6
6,607,771	-				-0.3
6,607,771	-				+1.4
6,607,771	-				+0.6
6,607,828	+				-2.0
6,607,828	+				+0.5
6,607,841	+				-2.1
6,607,841	+				-1.3
6,607,842	-				+1.2
6,607,842	-				+0.2
6,607,944	+				-0.1
6,607,944	+				+2.1
6,607,944	+				-2.2
6,607,944	+				+0.1
6,607,944	+				+0.4
6,607,944	+				-0.0
6,607,945	-				+1.0
6,607,945	-				+2.1
6,607,945	-				-0.0
6,607,945	-				-0.9
6,607,945	-				-1.4
6,607,945	-				-0.5
6,607,945	-				-0.9
6,607,945	-				-0.5
6,607,945	-				-1.0
6,608,005	+				+1.3
6,608,005	+				-1.8
6,608,005	+				-0.0
6,608,006	-				-0.7
6,608,006	-				-0.7
6,608,006	-				-0.2
6,608,006	-				-2.0
6,608,052	+				-1.3
6,608,052	+				-0.4
6,608,053	-				-0.0
6,608,053	-				-1.8
6,608,053	-				-0.3
6,608,186	+		PFLU_RS29735	0.16	-2.1
6,608,186	+		PFLU_RS29735	0.16	-2.3
6,608,186	+		PFLU_RS29735	0.16	+0.3
6,608,186	+		PFLU_RS29735	0.16	-2.2
6,608,187	-		PFLU_RS29735	0.16	-0.9
6,608,187	-		PFLU_RS29735	0.16	-1.2
6,608,354	+		PFLU_RS29735	0.28	+1.3
6,608,354	+		PFLU_RS29735	0.28	-2.2
6,608,354	+		PFLU_RS29735	0.28	-0.1
6,608,355	-		PFLU_RS29735	0.28	+1.0
6,608,355	-		PFLU_RS29735	0.28	-1.9
6,608,444	+		PFLU_RS29735	0.35	-2.5
6,608,444	+		PFLU_RS29735	0.35	-0.5
6,608,444	+		PFLU_RS29735	0.35	-0.0
6,608,444	+		PFLU_RS29735	0.35	-2.7
6,608,444	+		PFLU_RS29735	0.35	-0.3
6,608,445	-		PFLU_RS29735	0.35	+0.7
6,608,445	-		PFLU_RS29735	0.35	-0.0
6,608,453	+		PFLU_RS29735	0.36	-0.7
6,608,453	+		PFLU_RS29735	0.36	-1.0
6,608,453	+		PFLU_RS29735	0.36	-2.0
6,608,453	+		PFLU_RS29735	0.36	-1.5
6,608,453	+		PFLU_RS29735	0.36	-1.5
6,608,454	-		PFLU_RS29735	0.36	+0.3
6,608,454	-		PFLU_RS29735	0.36	-0.7
6,608,454	-		PFLU_RS29735	0.36	-0.3
6,608,454	-		PFLU_RS29735	0.36	-0.9
6,608,454	-		PFLU_RS29735	0.36	-1.3
6,608,454	-		PFLU_RS29735	0.36	-1.7
6,608,465	+		PFLU_RS29735	0.36	-1.5
6,608,465	+		PFLU_RS29735	0.36	-1.8
6,608,465	+		PFLU_RS29735	0.36	-2.2
6,608,466	-		PFLU_RS29735	0.37	-2.0
6,608,466	-		PFLU_RS29735	0.37	-1.5
6,608,466	-		PFLU_RS29735	0.37	-2.0
6,608,466	-		PFLU_RS29735	0.37	-1.6
6,608,477	+		PFLU_RS29735	0.37	-0.5
6,608,477	+		PFLU_RS29735	0.37	+0.3
6,608,477	+		PFLU_RS29735	0.37	-3.0
6,608,477	+		PFLU_RS29735	0.37	-2.9
6,608,477	+		PFLU_RS29735	0.37	-0.5
6,608,477	+		PFLU_RS29735	0.37	-0.0
6,608,478	-		PFLU_RS29735	0.37	-2.6
6,608,478	-		PFLU_RS29735	0.37	+0.5
6,608,478	-		PFLU_RS29735	0.37	-1.5
6,608,478	-		PFLU_RS29735	0.37	-0.3
6,608,556	-		PFLU_RS29735	0.43	-2.2
6,608,556	-		PFLU_RS29735	0.43	-1.5
6,608,556	-		PFLU_RS29735	0.43	-1.8
6,608,556	-		PFLU_RS29735	0.43	-1.7
6,608,556	-		PFLU_RS29735	0.43	-0.9
6,608,556	-		PFLU_RS29735	0.43	-0.9
6,608,556	-		PFLU_RS29735	0.43	-2.5
6,608,629	-		PFLU_RS29735	0.49	-0.5
6,608,774	+		PFLU_RS29735	0.60	-2.0
6,608,774	+		PFLU_RS29735	0.60	-1.4
6,608,774	+		PFLU_RS29735	0.60	+0.7
6,608,774	+		PFLU_RS29735	0.60	-0.9
6,608,774	+		PFLU_RS29735	0.60	-0.9
6,608,775	-		PFLU_RS29735	0.60	-0.0
6,608,775	-		PFLU_RS29735	0.60	-2.6
6,608,775	-		PFLU_RS29735	0.60	-1.9
6,608,775	-		PFLU_RS29735	0.60	-3.0
6,608,784	+		PFLU_RS29735	0.60	-2.2
6,608,784	+		PFLU_RS29735	0.60	-0.5
6,608,784	+		PFLU_RS29735	0.60	-1.4
6,608,784	+		PFLU_RS29735	0.60	-3.6
6,608,785	-		PFLU_RS29735	0.60	-2.7
6,608,785	-		PFLU_RS29735	0.60	-1.2
6,608,785	-		PFLU_RS29735	0.60	-0.9
6,608,851	+		PFLU_RS29735	0.65	-0.5
6,608,851	+		PFLU_RS29735	0.65	-1.2
6,608,852	-		PFLU_RS29735	0.65	+0.3
6,608,852	-		PFLU_RS29735	0.65	+0.3
6,608,852	-		PFLU_RS29735	0.65	-2.1
6,608,999	+		PFLU_RS29735	0.76	-1.1
6,608,999	+		PFLU_RS29735	0.76	-0.3
6,608,999	+		PFLU_RS29735	0.76	-0.5
6,608,999	+		PFLU_RS29735	0.76	+0.3
6,609,084	-		PFLU_RS29735	0.83	-2.6
6,609,084	-		PFLU_RS29735	0.83	-0.7
6,609,194	+				-1.6
6,609,194	+				-1.7
6,609,194	+				-2.7
6,609,194	+				-1.6
6,609,194	+				-2.0
6,609,194	+				-2.1
6,609,194	+				+2.3
6,609,195	-				-1.5
6,609,195	-				-1.0
6,609,195	-				-0.9
6,609,195	-				-1.0
6,609,195	-				-1.5
6,609,195	-				-1.0
6,609,289	-				-1.6
6,609,289	-				-1.2
6,609,289	-				-0.5
6,609,448	+		PFLU_RS29740	0.19	+0.7
6,609,449	-		PFLU_RS29740	0.19	-0.4
6,609,531	+		PFLU_RS29740	0.32	+1.0
6,609,531	+		PFLU_RS29740	0.32	-2.5
6,609,531	+		PFLU_RS29740	0.32	+1.3
6,609,531	+		PFLU_RS29740	0.32	+2.0
6,609,532	-		PFLU_RS29740	0.32	-1.3
6,609,532	-		PFLU_RS29740	0.32	-1.3
6,609,532	-		PFLU_RS29740	0.32	-0.0
6,609,532	-		PFLU_RS29740	0.32	+0.5
6,609,532	-		PFLU_RS29740	0.32	+1.3
6,609,532	-		PFLU_RS29740	0.32	-0.5
6,609,560	+		PFLU_RS29740	0.36	-0.5
6,609,774	+		PFLU_RS29740	0.68	-1.8
6,609,785	+		PFLU_RS29740	0.70	-0.2
6,609,785	+		PFLU_RS29740	0.70	+1.2
6,609,786	-		PFLU_RS29740	0.70	-1.7
6,609,786	-		PFLU_RS29740	0.70	-1.7
6,609,786	-		PFLU_RS29740	0.70	-2.3
6,609,789	+		PFLU_RS29740	0.71	+0.4
6,609,790	-		PFLU_RS29740	0.71	+0.1
6,609,790	-		PFLU_RS29740	0.71	-0.6
6,609,912	+		PFLU_RS29740	0.89	+1.1
6,609,913	-		PFLU_RS29740	0.89	-0.0
6,609,913	-		PFLU_RS29740	0.89	+0.5
6,609,913	-		PFLU_RS29740	0.89	-1.0
6,609,913	-		PFLU_RS29740	0.89	+0.5
6,609,968	+				-0.0
6,609,968	+				-2.4
6,609,968	+				+1.8
6,609,968	+				-1.5
6,609,968	+				+0.6
6,609,969	-				+0.3
6,609,969	-				+0.2
6,609,987	+				-0.1
6,609,988	-				-0.7
6,609,988	-				-0.3
6,610,017	+				-3.2
6,610,017	+				-0.8
6,610,018	-				+2.0
6,610,018	-				-1.7
6,610,018	-				+1.1
6,610,032	-				-0.7
6,610,032	-				+0.2
6,610,041	-				-0.7
6,610,041	-				+1.9
6,610,119	-				-0.4
6,610,144	+				-0.5
6,610,144	+				+1.4
6,610,144	+				+0.3
6,610,144	+				-0.5
6,610,144	+				-0.7
6,610,144	+				-0.9
6,610,144	+				-2.0
6,610,144	+				-0.9
6,610,144	+				-2.8
6,610,144	+				+1.5
6,610,144	+				+0.7
6,610,144	+				-0.4
6,610,144	+				-0.6
6,610,145	-				+0.3
6,610,145	-				-0.1
6,610,145	-				+1.3
6,610,145	-				-0.5
6,610,145	-				-1.9
6,610,145	-				-3.0
6,610,145	-				+0.8
6,610,145	-				-0.4
6,610,145	-				+0.2
6,610,145	-				+2.3
6,610,145	-				+0.5
6,610,145	-				+0.7
6,610,240	+		PFLU_RS29745	0.17	-1.0
6,610,240	+		PFLU_RS29745	0.17	-1.0
6,610,305	+		PFLU_RS29745	0.24	-0.2
6,610,305	+		PFLU_RS29745	0.24	-0.5
6,610,306	-		PFLU_RS29745	0.24	+1.3
6,610,306	-		PFLU_RS29745	0.24	+0.5