Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28795

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
6,404,693	+		PFLU_RS28785	0.72	-0.9
6,404,694	-		PFLU_RS28785	0.72	+0.7
6,404,694	-		PFLU_RS28785	0.72	-0.7
6,404,716	+		PFLU_RS28785	0.74	-2.1
6,404,716	+		PFLU_RS28785	0.74	+2.3
6,404,716	+		PFLU_RS28785	0.74	-1.3
6,404,717	-		PFLU_RS28785	0.74	+0.7
6,404,717	-		PFLU_RS28785	0.74	+0.3
6,404,717	-		PFLU_RS28785	0.74	+1.3
6,404,717	-		PFLU_RS28785	0.74	-1.6
6,404,717	-		PFLU_RS28785	0.74	-0.1
6,404,759	+		PFLU_RS28785	0.77	-1.8
6,404,759	+		PFLU_RS28785	0.77	-0.3
6,404,759	+		PFLU_RS28785	0.77	-0.3
6,404,759	+		PFLU_RS28785	0.77	+0.3
6,404,759	+		PFLU_RS28785	0.77	-0.8
6,404,759	+		PFLU_RS28785	0.77	+0.8
6,404,760	-		PFLU_RS28785	0.77	+2.1
6,404,760	-		PFLU_RS28785	0.77	+1.3
6,404,760	-		PFLU_RS28785	0.77	+1.3
6,404,760	-		PFLU_RS28785	0.77	+0.7
6,404,760	-		PFLU_RS28785	0.77	+0.7
6,404,760	-		PFLU_RS28785	0.77	+1.8
6,404,760	-		PFLU_RS28785	0.77	-0.3
6,404,870	+		PFLU_RS28785	0.85	+0.4
6,404,870	+		PFLU_RS28785	0.85	+0.3
6,404,870	+		PFLU_RS28785	0.85	+0.7
6,404,871	-		PFLU_RS28785	0.85	+0.7
6,404,873	+		PFLU_RS28785	0.85	+0.4
6,404,873	+		PFLU_RS28785	0.85	+0.4
6,404,873	+		PFLU_RS28785	0.85	-0.9
6,404,873	+		PFLU_RS28785	0.85	+0.5
6,404,873	+		PFLU_RS28785	0.85	-0.3
6,404,873	+		PFLU_RS28785	0.85	+2.3
6,404,874	-		PFLU_RS28785	0.85	-0.1
6,404,874	-		PFLU_RS28785	0.85	-0.1
6,404,874	-		PFLU_RS28785	0.85	-0.6
6,404,874	-		PFLU_RS28785	0.85	+1.8
6,404,874	-		PFLU_RS28785	0.85	+0.7
6,404,891	+		PFLU_RS28785	0.86	+0.7
6,404,891	+		PFLU_RS28785	0.86	-0.9
6,404,891	+		PFLU_RS28785	0.86	+0.7
6,404,891	+		PFLU_RS28785	0.86	+2.3
6,404,891	+		PFLU_RS28785	0.86	+0.7
6,404,891	+		PFLU_RS28785	0.86	+0.3
6,404,892	-		PFLU_RS28785	0.86	+0.3
6,404,892	-		PFLU_RS28785	0.86	+0.3
6,404,892	-		PFLU_RS28785	0.86	-0.9
6,405,069	+				-0.6
6,405,069	+				-0.1
6,405,069	+				-0.1
6,405,069	+				-1.4
6,405,069	+				-1.1
6,405,070	-				-0.7
6,405,070	-				+1.3
6,405,075	+				-1.7
6,405,075	+				+0.7
6,405,075	+				+1.3
6,405,075	+				+0.3
6,405,076	-				-0.7
6,405,076	-				+0.7
6,405,076	-				+0.3
6,405,076	-				+2.4
6,405,076	-				+1.2
6,405,076	-				-1.9
6,405,076	-				+0.4
6,405,076	-				+1.7
6,405,076	-				+0.1
6,405,162	+				-0.4
6,405,162	+				+1.6
6,405,163	-				+3.3
6,405,170	+				+2.1
6,405,170	+				+2.9
6,405,170	+				-1.2
6,405,171	-				+3.4
6,405,171	-				+4.0
6,405,171	-				+2.8
6,405,171	-				+2.7
6,405,171	-				+3.3
6,405,171	-				+2.5
6,405,171	-				+3.0
6,405,171	-				+2.1
6,405,171	-				+4.3
6,405,171	-				+3.8
6,405,171	-				+2.4
6,405,171	-				+3.6
6,405,171	-				+2.3
6,405,299	+		PFLU_RS28790	0.60	-1.7
6,405,300	-		PFLU_RS28790	0.60	+3.6
6,405,408	+				-0.7
6,405,409	-				+0.3
6,405,412	-				+1.0
6,405,412	-				+3.8
6,405,421	-				-0.6
6,405,439	+				-1.0
6,405,439	+				+1.3
6,405,458	-				+1.8
6,405,479	+				-0.7
6,405,653	+				+0.5
6,405,654	-				+0.3
6,405,704	-				+1.1
6,405,746	+				+0.7
6,405,746	+				+0.3
6,405,747	-				-0.4
6,405,747	-				-1.6
6,405,747	-				+0.7
6,405,747	-				+2.1
6,405,747	-				-2.3
6,405,747	-				-1.2
6,405,747	-				+1.5
6,405,747	-				+0.3
6,405,750	+				-0.1
6,405,750	+				+0.3
6,405,750	+				-0.7
6,405,750	+				-1.4
6,405,750	+				-1.3
6,405,750	+				-2.1
6,405,750	+				+0.4
6,405,750	+				-0.6
6,405,750	+				-0.9
6,405,750	+				-0.3
6,405,750	+				+0.3
6,405,750	+				-1.7
6,405,750	+				+0.0
6,405,750	+				-0.3
6,405,751	-				+0.5
6,405,751	-				+1.3
6,405,751	-				+1.1
6,405,751	-				-2.9
6,405,751	-				+1.5
6,405,751	-				-1.7
6,405,751	-				-2.2
6,405,751	-				+0.7
6,405,751	-				+1.7
6,405,751	-				+0.4
6,405,751	-				-1.8
6,405,751	-				+2.3
6,405,751	-				-0.9
6,405,751	-				+0.3
6,405,751	-				-2.0
6,405,751	-				+0.1
6,405,751	-				-1.9
6,405,751	-				+1.5
6,405,751	-				-0.4
6,405,751	-				+1.4
6,405,759	+				+0.0
6,405,760	-				-1.7
6,405,760	-				+0.7
6,405,760	-				-1.7
6,405,760	-				+1.4
6,405,760	-				-0.7
6,405,760	-				+0.6
6,405,760	-				+0.4
6,405,760	-				+2.8
6,405,760	-				-0.7
6,405,760	-				-0.7
6,405,760	-				+0.3
6,405,760	-				+2.5
6,405,760	-				+0.3
6,405,769	+				-0.4
6,405,770	-				-0.4
6,405,824	+		PFLU_RS28795	0.11	-0.1
6,405,825	-		PFLU_RS28795	0.11	+0.3
6,405,825	-		PFLU_RS28795	0.11	+0.7
6,405,855	+		PFLU_RS28795	0.13	+0.3
6,405,855	+		PFLU_RS28795	0.13	-1.3
6,405,856	-		PFLU_RS28795	0.13	+0.7
6,405,856	-		PFLU_RS28795	0.13	+1.5
6,405,868	+		PFLU_RS28795	0.14	+0.8
6,405,880	+		PFLU_RS28795	0.15	-2.3
6,405,880	+		PFLU_RS28795	0.15	-3.1
6,405,880	+		PFLU_RS28795	0.15	-1.0
6,405,936	-		PFLU_RS28795	0.19	-1.0
6,406,065	+		PFLU_RS28795	0.28	-0.7
6,406,066	-		PFLU_RS28795	0.28	+0.5
6,406,121	+		PFLU_RS28795	0.32	-1.8
6,406,121	+		PFLU_RS28795	0.32	-2.5
6,406,121	+		PFLU_RS28795	0.32	-2.3
6,406,121	+		PFLU_RS28795	0.32	+1.0
6,406,122	-		PFLU_RS28795	0.33	-2.4
6,406,122	-		PFLU_RS28795	0.33	-0.3
6,406,122	-		PFLU_RS28795	0.33	-0.2
6,406,122	-		PFLU_RS28795	0.33	+1.2
6,406,122	-		PFLU_RS28795	0.33	-0.1
6,406,208	+		PFLU_RS28795	0.39	-1.2
6,406,208	+		PFLU_RS28795	0.39	-1.2
6,406,208	+		PFLU_RS28795	0.39	-0.9
6,406,208	+		PFLU_RS28795	0.39	-1.4
6,406,209	-		PFLU_RS28795	0.39	-0.4
6,406,232	+		PFLU_RS28795	0.41	-1.7
6,406,232	+		PFLU_RS28795	0.41	-1.9
6,406,232	+		PFLU_RS28795	0.41	-1.8
6,406,232	+		PFLU_RS28795	0.41	-0.3
6,406,232	+		PFLU_RS28795	0.41	+0.5
6,406,232	+		PFLU_RS28795	0.41	-0.6
6,406,232	+		PFLU_RS28795	0.41	+0.0
6,406,232	+		PFLU_RS28795	0.41	-0.9
6,406,232	+		PFLU_RS28795	0.41	+0.1
6,406,233	-		PFLU_RS28795	0.41	+1.3
6,406,233	-		PFLU_RS28795	0.41	-2.3
6,406,233	-		PFLU_RS28795	0.41	-3.0
6,406,370	+		PFLU_RS28795	0.51	+1.1
6,406,370	+		PFLU_RS28795	0.51	-1.1
6,406,371	-		PFLU_RS28795	0.51	-1.2
6,406,448	+		PFLU_RS28795	0.56	-1.3
6,406,479	+		PFLU_RS28795	0.58	-1.0
6,406,479	+		PFLU_RS28795	0.58	-2.8
6,406,479	+		PFLU_RS28795	0.58	+1.3
6,406,479	+		PFLU_RS28795	0.58	-1.1
6,406,479	+		PFLU_RS28795	0.58	-3.4
6,406,479	+		PFLU_RS28795	0.58	-0.5
6,406,479	+		PFLU_RS28795	0.58	-0.3
6,406,479	+		PFLU_RS28795	0.58	+0.1
6,406,479	+		PFLU_RS28795	0.58	+2.0
6,406,479	+		PFLU_RS28795	0.58	-0.9
6,406,479	+		PFLU_RS28795	0.58	-1.0
6,406,479	+		PFLU_RS28795	0.58	-0.2
6,406,479	+		PFLU_RS28795	0.58	+1.1
6,406,479	+		PFLU_RS28795	0.58	+2.3
6,406,479	+		PFLU_RS28795	0.58	-1.8
6,406,479	+		PFLU_RS28795	0.58	+1.0
6,406,479	+		PFLU_RS28795	0.58	-0.2
6,406,479	+		PFLU_RS28795	0.58	-0.1
6,406,480	-		PFLU_RS28795	0.59	-0.4
6,406,480	-		PFLU_RS28795	0.59	-0.3
6,406,480	-		PFLU_RS28795	0.59	-0.6
6,406,480	-		PFLU_RS28795	0.59	+0.7
6,406,480	-		PFLU_RS28795	0.59	+0.8
6,406,480	-		PFLU_RS28795	0.59	-1.7
6,406,480	-		PFLU_RS28795	0.59	+0.3
6,406,480	-		PFLU_RS28795	0.59	-1.7
6,406,480	-		PFLU_RS28795	0.59	+0.3
6,406,480	-		PFLU_RS28795	0.59	-0.1
6,406,480	-		PFLU_RS28795	0.59	-0.7
6,406,480	-		PFLU_RS28795	0.59	+0.1
6,406,480	-		PFLU_RS28795	0.59	+1.2
6,406,480	-		PFLU_RS28795	0.59	-0.7
6,406,480	-		PFLU_RS28795	0.59	-2.5
6,406,480	-		PFLU_RS28795	0.59	-1.2
6,406,480	-		PFLU_RS28795	0.59	-2.4
6,406,480	-		PFLU_RS28795	0.59	+0.3
6,406,480	-		PFLU_RS28795	0.59	-3.0
6,406,480	-		PFLU_RS28795	0.59	+1.7
6,406,480	-		PFLU_RS28795	0.59	+2.0
6,406,480	-		PFLU_RS28795	0.59	+1.8
6,406,480	-		PFLU_RS28795	0.59	+0.5
6,406,480	-		PFLU_RS28795	0.59	+0.9
6,406,480	-		PFLU_RS28795	0.59	-1.1
6,406,626	-		PFLU_RS28795	0.69	-1.3
6,406,626	-		PFLU_RS28795	0.69	-1.4
6,406,649	+		PFLU_RS28795	0.71	-0.7
6,406,649	+		PFLU_RS28795	0.71	-1.3
6,406,649	+		PFLU_RS28795	0.71	-2.1
6,406,649	+		PFLU_RS28795	0.71	-0.1
6,406,649	+		PFLU_RS28795	0.71	+0.2
6,406,649	+		PFLU_RS28795	0.71	-0.8
6,406,649	+		PFLU_RS28795	0.71	+1.0
6,406,649	+		PFLU_RS28795	0.71	-1.1
6,406,649	+		PFLU_RS28795	0.71	+0.2
6,406,649	+		PFLU_RS28795	0.71	-1.1
6,406,650	-		PFLU_RS28795	0.71	+0.0
6,406,650	-		PFLU_RS28795	0.71	-1.2
6,406,650	-		PFLU_RS28795	0.71	-0.1
6,406,650	-		PFLU_RS28795	0.71	-1.7
6,406,650	-		PFLU_RS28795	0.71	-1.4
6,406,650	-		PFLU_RS28795	0.71	-2.1
6,406,650	-		PFLU_RS28795	0.71	+0.1
6,406,650	-		PFLU_RS28795	0.71	-1.1
6,406,705	-		PFLU_RS28795	0.75	-1.5
6,406,769	+		PFLU_RS28795	0.80	-1.1
6,406,769	+		PFLU_RS28795	0.80	+0.1
6,406,770	-		PFLU_RS28795	0.80	+0.5
6,406,770	-		PFLU_RS28795	0.80	-0.1
6,406,770	-		PFLU_RS28795	0.80	-0.3
6,406,856	+		PFLU_RS28795	0.86	-0.6
6,406,856	+		PFLU_RS28795	0.86	-0.3
6,406,856	+		PFLU_RS28795	0.86	+0.3
6,406,856	+		PFLU_RS28795	0.86	+0.4
6,406,857	-		PFLU_RS28795	0.86	-3.1
6,406,857	-		PFLU_RS28795	0.86	-1.0
6,406,857	-		PFLU_RS28795	0.86	-1.1
6,406,857	-		PFLU_RS28795	0.86	-0.4
6,406,857	-		PFLU_RS28795	0.86	-0.8
6,406,857	-		PFLU_RS28795	0.86	+0.3
6,406,857	-		PFLU_RS28795	0.86	+0.0
6,406,937	+				+0.1
6,406,937	+				-1.4
6,406,937	+				-3.1
6,406,937	+				-1.2
6,406,937	+				+0.9
6,406,937	+				+0.4
6,406,937	+				-2.1
6,406,937	+				+0.4
6,406,937	+				-3.1
6,406,937	+				-2.2
6,406,937	+				+1.1
6,406,938	-				-1.6
6,406,938	-				-1.4
6,406,938	-				-0.9
6,406,938	-				-1.5
6,406,938	-				-0.5
6,406,938	-				-0.3
6,406,938	-				+1.4
6,406,938	-				+0.3
6,406,938	-				+1.0
6,406,938	-				-1.1
6,406,938	-				-2.3
6,406,948	+				-0.1
6,406,948	+				-0.2
6,406,949	-				-0.1
6,406,949	-				-1.0
6,406,949	-				-0.9
6,406,952	+				+1.2
6,406,952	+				-1.4
6,406,952	+				-0.7
6,406,952	+				+0.5
6,406,952	+				-1.7
6,406,953	-				-1.6
6,406,953	-				-0.3
6,406,953	-				-1.7
6,406,953	-				-1.4
6,406,953	-				-1.7
6,406,953	-				-0.1
6,406,953	-				+3.7
6,406,953	-				-1.5
6,406,960	+				-0.9
6,406,960	+				-1.6
6,406,960	+				+0.3
6,406,961	-				-0.6
6,406,961	-				-3.2
6,406,961	-				-1.4
6,406,961	-				-0.6
6,407,024	+				-0.1
6,407,024	+				-1.9
6,407,024	+				+0.7
6,407,024	+				-1.4
6,407,024	+				-0.5
6,407,024	+				-1.4
6,407,024	+				-0.1
6,407,024	+				-0.3
6,407,024	+				-0.9
6,407,024	+				+1.8
6,407,025	-				+0.7
6,407,025	-				+1.0
6,407,025	-				-1.8
6,407,025	-				-0.9
6,407,025	-				-0.3
6,407,025	-				+1.2
6,407,025	-				-0.1
6,407,025	-				+0.0
6,407,025	-				+1.2
6,407,025	-				-1.7
6,407,025	-				+0.4
6,407,025	-				-0.1
6,407,033	+				+0.7
6,407,034	-				-1.2
6,407,034	-				+0.5
6,407,034	-				-0.4
6,407,034	-				-0.3
6,407,034	-				-1.3
6,407,041	+				+0.5
6,407,048	+				+1.1
6,407,049	-				+0.4
6,407,049	-				+0.3
6,407,104	-				-0.4
6,407,104	-				-1.0
6,407,114	+				-2.3
6,407,114	+				-1.2
6,407,115	-				-2.3
6,407,173	+				+0.4
6,407,173	+				-1.1
6,407,173	+				+0.9
6,407,174	-				-1.7
6,407,174	-				-1.0
6,407,174	-				+1.3