Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16765

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
3,802,834	+		PFLU_RS16760	0.11	+0.3
3,802,834	+		PFLU_RS16760	0.11	-0.3
3,802,834	+		PFLU_RS16760	0.11	+2.0
3,802,834	+		PFLU_RS16760	0.11	-0.9
3,802,834	+		PFLU_RS16760	0.11	+1.3
3,802,835	-		PFLU_RS16760	0.12	+1.2
3,802,835	-		PFLU_RS16760	0.12	+3.0
3,802,835	-		PFLU_RS16760	0.12	-0.2
3,802,880	+		PFLU_RS16760	0.16	+0.9
3,802,880	+		PFLU_RS16760	0.16	-2.0
3,802,906	+		PFLU_RS16760	0.19	-2.3
3,803,063	+		PFLU_RS16760	0.34	+0.9
3,803,063	+		PFLU_RS16760	0.34	+0.3
3,803,064	-		PFLU_RS16760	0.35	-0.9
3,803,337	+		PFLU_RS16760	0.62	-2.8
3,803,431	+		PFLU_RS16760	0.71	-2.1
3,803,431	+		PFLU_RS16760	0.71	+0.2
3,803,431	+		PFLU_RS16760	0.71	+0.3
3,803,431	+		PFLU_RS16760	0.71	+0.4
3,803,431	+		PFLU_RS16760	0.71	-1.3
3,803,431	+		PFLU_RS16760	0.71	+0.4
3,803,431	+		PFLU_RS16760	0.71	+0.3
3,803,431	+		PFLU_RS16760	0.71	-1.2
3,803,431	+		PFLU_RS16760	0.71	+0.5
3,803,431	+		PFLU_RS16760	0.71	-1.4
3,803,431	+		PFLU_RS16760	0.71	+1.1
3,803,431	+		PFLU_RS16760	0.71	-0.7
3,803,431	+		PFLU_RS16760	0.71	-0.1
3,803,432	-		PFLU_RS16760	0.71	+0.3
3,803,432	-		PFLU_RS16760	0.71	-0.8
3,803,432	-		PFLU_RS16760	0.71	+0.3
3,803,432	-		PFLU_RS16760	0.71	-2.3
3,803,432	-		PFLU_RS16760	0.71	-1.0
3,803,432	-		PFLU_RS16760	0.71	+0.2
3,803,432	-		PFLU_RS16760	0.71	-0.9
3,803,432	-		PFLU_RS16760	0.71	-1.9
3,803,432	-		PFLU_RS16760	0.71	-0.4
3,803,432	-		PFLU_RS16760	0.71	-0.1
3,803,432	-		PFLU_RS16760	0.71	-0.8
3,803,448	+		PFLU_RS16760	0.73	-0.2
3,803,535	-		PFLU_RS16760	0.82	+0.2
3,803,535	-		PFLU_RS16760	0.82	-2.0
3,803,791	-				+0.3
3,803,791	-				-0.3
3,803,818	-				+0.6
3,803,831	+				+0.3
3,803,831	+				-0.6
3,803,831	+				-2.0
3,803,831	+				+0.1
3,803,832	-				-0.1
3,803,832	-				+2.4
3,803,832	-				+0.0
3,803,883	+				+1.3
3,803,883	+				+1.3
3,803,883	+				+0.3
3,803,883	+				-1.9
3,803,883	+				+0.2
3,803,884	-				-0.3
3,803,884	-				-0.6
3,803,884	-				-1.4
3,803,884	-				-0.6
3,803,884	-				-0.7
3,803,884	-				-1.7
3,803,885	+				-0.4
3,803,885	+				-0.5
3,803,885	+				-1.5
3,803,885	+				-0.9
3,803,885	+				-0.0
3,803,886	-				+0.9
3,803,931	+		PFLU_RS16765	0.11	-1.3
3,803,931	+		PFLU_RS16765	0.11	+0.0
3,803,932	-		PFLU_RS16765	0.12	+0.6
3,803,958	+		PFLU_RS16765	0.14	+0.5
3,803,958	+		PFLU_RS16765	0.14	+0.4
3,803,958	+		PFLU_RS16765	0.14	+0.7
3,803,958	+		PFLU_RS16765	0.14	+0.7
3,803,958	+		PFLU_RS16765	0.14	+0.0
3,803,958	+		PFLU_RS16765	0.14	+1.2
3,803,959	-		PFLU_RS16765	0.14	-0.9
3,803,959	-		PFLU_RS16765	0.14	-1.7
3,804,273	+		PFLU_RS16765	0.49	-0.0
3,804,273	+		PFLU_RS16765	0.49	-2.1
3,804,273	+		PFLU_RS16765	0.49	-0.9
3,804,274	-		PFLU_RS16765	0.49	+0.5
3,804,274	-		PFLU_RS16765	0.49	-0.1
3,804,274	-		PFLU_RS16765	0.49	-0.3
3,804,280	+		PFLU_RS16765	0.49	+0.8
3,804,334	+		PFLU_RS16765	0.55	+1.8
3,804,336	+		PFLU_RS16765	0.55	+1.1
3,804,336	+		PFLU_RS16765	0.55	+2.0
3,804,336	+		PFLU_RS16765	0.55	+1.8
3,804,336	+		PFLU_RS16765	0.55	+0.6
3,804,336	+		PFLU_RS16765	0.55	+1.2
3,804,337	-		PFLU_RS16765	0.55	+0.4
3,804,337	-		PFLU_RS16765	0.55	+0.0
3,804,337	-		PFLU_RS16765	0.55	+2.0
3,804,337	-		PFLU_RS16765	0.55	-1.1
3,804,337	-		PFLU_RS16765	0.55	+0.6
3,804,337	-		PFLU_RS16765	0.55	+1.0
3,804,337	-		PFLU_RS16765	0.55	+0.6
3,804,337	-		PFLU_RS16765	0.55	+1.4
3,804,337	-		PFLU_RS16765	0.55	+1.1
3,804,337	-		PFLU_RS16765	0.55	-0.9
3,804,337	-		PFLU_RS16765	0.55	+0.4
3,804,348	+		PFLU_RS16765	0.57	+1.2
3,804,349	-		PFLU_RS16765	0.57	+0.9
3,804,399	+		PFLU_RS16765	0.62	-0.1
3,804,399	+		PFLU_RS16765	0.62	-0.2
3,804,399	+		PFLU_RS16765	0.62	+0.2
3,804,399	+		PFLU_RS16765	0.62	-0.7
3,804,399	+		PFLU_RS16765	0.62	-0.8
3,804,399	+		PFLU_RS16765	0.62	+1.7
3,804,399	+		PFLU_RS16765	0.62	-1.9
3,804,399	+		PFLU_RS16765	0.62	+1.4
3,804,399	+		PFLU_RS16765	0.62	+0.4
3,804,400	-		PFLU_RS16765	0.62	+3.4
3,804,400	-		PFLU_RS16765	0.62	+1.6
3,804,519	+		PFLU_RS16765	0.75	-1.1
3,804,519	+		PFLU_RS16765	0.75	+2.0
3,804,520	-		PFLU_RS16765	0.75	-0.1
3,804,520	-		PFLU_RS16765	0.75	+1.7
3,804,520	-		PFLU_RS16765	0.75	+1.4
3,804,655	-				+1.4
3,804,707	+				-0.3
3,804,707	+				+1.2
3,804,785	+				-0.5
3,804,786	-				-0.6
3,804,848	+				-1.4
3,804,849	-				-2.1
3,804,849	-				-0.6
3,804,873	+				+0.6
3,804,873	+				+1.4
3,804,873	+				-1.0
3,804,873	+				+1.9
3,804,873	+				-1.7
3,804,873	+				-1.6
3,804,873	+				-0.9
3,804,873	+				-1.4
3,804,873	+				+1.4
3,804,873	+				-0.6
3,804,873	+				+0.7
3,804,873	+				-2.9
3,804,873	+				-1.1
3,804,873	+				+1.2
3,804,873	+				-0.1
3,804,873	+				+1.4
3,804,873	+				-1.4
3,804,873	+				-1.7
3,804,873	+				+0.6
3,804,873	+				-1.1
3,804,874	-				+0.7
3,804,874	-				+1.8
3,804,874	-				-0.3
3,804,874	-				+1.2
3,804,874	-				+0.9
3,804,874	-				+0.3
3,804,874	-				+0.0
3,804,874	-				-1.7
3,804,874	-				-1.1
3,804,874	-				+1.3
3,804,874	-				-0.3
3,804,874	-				+0.2
3,804,881	+				+0.6
3,804,882	-				+0.3
3,804,911	+				-0.1
3,804,911	+				-1.1
3,804,911	+				-1.7
3,804,911	+				+0.3
3,804,911	+				-1.6
3,804,911	+				+1.4
3,804,911	+				-0.1
3,804,911	+				-1.1
3,804,911	+				+0.9
3,804,911	+				+1.0
3,804,911	+				-1.6
3,804,912	-				+0.2
3,804,912	-				+0.9
3,804,912	-				+0.9
3,804,912	-				-1.0
3,804,912	-				+2.8
3,804,912	-				-1.1
3,804,912	-				-0.4
3,804,912	-				+1.2
3,804,912	-				-2.2
3,804,912	-				-0.0
3,804,914	+				-1.0
3,804,914	+				+0.4
3,804,914	+				+1.4
3,804,915	-				+0.4
3,804,915	-				-1.1
3,804,915	-				+1.1
3,804,915	-				-0.6
3,805,017	+		PFLU_RS16770	0.17	+0.2
3,805,018	-		PFLU_RS16770	0.17	+1.3
3,805,032	+		PFLU_RS16770	0.18	+2.1
3,805,087	+		PFLU_RS16770	0.22	-1.6
3,805,109	+		PFLU_RS16770	0.23	-2.6
3,805,110	-		PFLU_RS16770	0.23	-1.1
3,805,184	+		PFLU_RS16770	0.28	+0.8
3,805,206	+		PFLU_RS16770	0.30	-1.1
3,805,207	-		PFLU_RS16770	0.30	-0.6
3,805,211	+		PFLU_RS16770	0.30	-1.6
3,805,211	+		PFLU_RS16770	0.30	+0.2
3,805,211	+		PFLU_RS16770	0.30	+0.2
3,805,211	+		PFLU_RS16770	0.30	-0.3
3,805,211	+		PFLU_RS16770	0.30	-1.9
3,805,211	+		PFLU_RS16770	0.30	+3.0
3,805,211	+		PFLU_RS16770	0.30	+1.0
3,805,212	-		PFLU_RS16770	0.30	+0.3
3,805,212	-		PFLU_RS16770	0.30	+0.0
3,805,212	-		PFLU_RS16770	0.30	+1.0
3,805,260	-		PFLU_RS16770	0.34	-0.1
3,805,260	-		PFLU_RS16770	0.34	+0.3
3,805,260	-		PFLU_RS16770	0.34	+0.4
3,805,260	-		PFLU_RS16770	0.34	-0.4
3,805,319	+		PFLU_RS16770	0.38	-0.9
3,805,319	+		PFLU_RS16770	0.38	-0.1
3,805,319	+		PFLU_RS16770	0.38	-0.9
3,805,319	+		PFLU_RS16770	0.38	+1.6
3,805,319	+		PFLU_RS16770	0.38	+1.7
3,805,319	+		PFLU_RS16770	0.38	+1.3
3,805,319	+		PFLU_RS16770	0.38	-1.1
3,805,319	+		PFLU_RS16770	0.38	+0.3
3,805,319	+		PFLU_RS16770	0.38	-1.6
3,805,319	+		PFLU_RS16770	0.38	+5.0
3,805,319	+		PFLU_RS16770	0.38	+1.8
3,805,320	-		PFLU_RS16770	0.38	-0.4
3,805,320	-		PFLU_RS16770	0.38	+1.2
3,805,320	-		PFLU_RS16770	0.38	-0.4
3,805,320	-		PFLU_RS16770	0.38	-0.4
3,805,320	-		PFLU_RS16770	0.38	+1.9
3,805,320	-		PFLU_RS16770	0.38	+0.4
3,805,400	+		PFLU_RS16770	0.44	-0.9
3,805,490	+		PFLU_RS16770	0.50	-1.0
3,805,490	+		PFLU_RS16770	0.50	+0.0
3,805,490	+		PFLU_RS16770	0.50	-2.5
3,805,490	+		PFLU_RS16770	0.50	-0.3
3,805,490	+		PFLU_RS16770	0.50	+3.7
3,805,490	+		PFLU_RS16770	0.50	+0.9
3,805,490	+		PFLU_RS16770	0.50	-1.1
3,805,490	+		PFLU_RS16770	0.50	+1.4
3,805,491	-		PFLU_RS16770	0.50	+1.3
3,805,491	-		PFLU_RS16770	0.50	-2.6
3,805,491	-		PFLU_RS16770	0.50	+0.8
3,805,491	-		PFLU_RS16770	0.50	+2.7
3,805,491	-		PFLU_RS16770	0.50	-1.6
3,805,491	-		PFLU_RS16770	0.50	+1.3
3,805,491	-		PFLU_RS16770	0.50	+0.8
3,805,538	+		PFLU_RS16770	0.54	+0.1
3,805,539	-		PFLU_RS16770	0.54	+1.0
3,805,539	-		PFLU_RS16770	0.54	+1.2
3,805,539	-		PFLU_RS16770	0.54	-0.4
3,805,564	+		PFLU_RS16770	0.56	-0.3
3,805,564	+		PFLU_RS16770	0.56	+0.6
3,805,564	+		PFLU_RS16770	0.56	-0.4
3,805,564	+		PFLU_RS16770	0.56	-0.1
3,805,564	+		PFLU_RS16770	0.56	-0.1
3,805,564	+		PFLU_RS16770	0.56	-0.3
3,805,564	+		PFLU_RS16770	0.56	+0.2
3,805,564	+		PFLU_RS16770	0.56	-1.9
3,805,565	-		PFLU_RS16770	0.56	-1.7
3,805,565	-		PFLU_RS16770	0.56	+0.4
3,805,565	-		PFLU_RS16770	0.56	+2.4
3,805,565	-		PFLU_RS16770	0.56	+1.1
3,805,680	+		PFLU_RS16770	0.64	+0.2
3,805,715	+		PFLU_RS16770	0.66	-1.7
3,805,715	+		PFLU_RS16770	0.66	+0.9
3,805,716	-		PFLU_RS16770	0.66	-0.7
3,805,716	-		PFLU_RS16770	0.66	-2.0
3,805,716	-		PFLU_RS16770	0.66	-1.1
3,805,716	-		PFLU_RS16770	0.66	-0.9
3,805,716	-		PFLU_RS16770	0.66	-0.6