Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21170 and BWI76_RS21175 are separated by 120 nucleotides BWI76_RS21175 and BWI76_RS21180 are separated by 54 nucleotides BWI76_RS21180 and BWI76_RS21185 overlap by 10 nucleotides BWI76_RS21185 and BWI76_RS21190 are separated by 124 nucleotides
BWI76_RS21170: BWI76_RS21170 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 4,432,173 to 4,432,904
_RS21170
BWI76_RS21175: BWI76_RS21175 - inositol monophosphatase, at 4,433,025 to 4,433,828
_RS21175
BWI76_RS21180: BWI76_RS21180 - nickel transporter, at 4,433,883 to 4,434,863
_RS21180
BWI76_RS21185: BWI76_RS21185 - hypothetical protein, at 4,434,854 to 4,435,492
_RS21185
BWI76_RS21190: BWI76_RS21190 - stationary phase inducible protein CsiE, at 4,435,617 to 4,436,894
_RS21190
Position (kb)
4433
4434
4435 Strain fitness (log2 ratio)
-1
0
1 at 4434.142 kb on + strand, within BWI76_RS21180 at 4434.207 kb on + strand, within BWI76_RS21180 at 4434.213 kb on - strand, within BWI76_RS21180 at 4434.461 kb on + strand, within BWI76_RS21180 at 4434.484 kb on - strand, within BWI76_RS21180 at 4434.484 kb on - strand, within BWI76_RS21180 at 4434.509 kb on - strand, within BWI76_RS21180 at 4434.588 kb on + strand, within BWI76_RS21180 at 4434.706 kb on - strand, within BWI76_RS21180 at 4434.898 kb on + strand at 4435.053 kb on + strand, within BWI76_RS21185 at 4435.066 kb on + strand, within BWI76_RS21185 at 4435.126 kb on + strand, within BWI76_RS21185 at 4435.134 kb on - strand, within BWI76_RS21185 at 4435.141 kb on - strand, within BWI76_RS21185 at 4435.311 kb on + strand, within BWI76_RS21185 at 4435.329 kb on - strand, within BWI76_RS21185 at 4435.493 kb on - strand at 4435.677 kb on + strand at 4435.747 kb on - strand, within BWI76_RS21190 at 4435.758 kb on + strand, within BWI76_RS21190
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,434,142 + BWI76_RS21180 0.26 +1.0 4,434,207 + BWI76_RS21180 0.33 +1.0 4,434,213 - BWI76_RS21180 0.34 -0.6 4,434,461 + BWI76_RS21180 0.59 +0.3 4,434,484 - BWI76_RS21180 0.61 +0.4 4,434,484 - BWI76_RS21180 0.61 -1.6 4,434,509 - BWI76_RS21180 0.64 +0.6 4,434,588 + BWI76_RS21180 0.72 +1.6 4,434,706 - BWI76_RS21180 0.84 +0.6 4,434,898 + +0.6 4,435,053 + BWI76_RS21185 0.31 +0.7 4,435,066 + BWI76_RS21185 0.33 +1.6 4,435,126 + BWI76_RS21185 0.43 +0.1 4,435,134 - BWI76_RS21185 0.44 +0.2 4,435,141 - BWI76_RS21185 0.45 -1.6 4,435,311 + BWI76_RS21185 0.72 +0.7 4,435,329 - BWI76_RS21185 0.74 +0.9 4,435,493 - +0.2 4,435,677 + +0.5 4,435,747 - BWI76_RS21190 0.10 -0.8 4,435,758 + BWI76_RS21190 0.11 -0.3
Or see this region's nucleotide sequence