Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13375 and BWI76_RS13380 are separated by 11 nucleotides BWI76_RS13380 and BWI76_RS13385 are separated by 168 nucleotides BWI76_RS13385 and BWI76_RS13390 overlap by 1 nucleotides
BWI76_RS13375: BWI76_RS13375 - protease, at 2,789,088 to 2,791,052
_RS13375
BWI76_RS13380: BWI76_RS13380 - hypothetical protein, at 2,791,064 to 2,791,297
_RS13380
BWI76_RS13385: BWI76_RS13385 - DUF2474 domain-containing protein, at 2,791,466 to 2,791,591
_RS13385
BWI76_RS13390: BWI76_RS13390 - ubiquinol oxidase subunit II, at 2,791,591 to 2,792,601
_RS13390
Position (kb)
2791
2792 Strain fitness (log2 ratio)
-2
-1
0
1 at 2790.470 kb on + strand, within BWI76_RS13375 at 2791.123 kb on + strand, within BWI76_RS13380 at 2791.232 kb on + strand, within BWI76_RS13380 at 2791.348 kb on + strand at 2791.609 kb on + strand at 2791.672 kb on + strand at 2791.692 kb on + strand, within BWI76_RS13390 at 2791.692 kb on + strand, within BWI76_RS13390 at 2791.700 kb on - strand, within BWI76_RS13390 at 2791.742 kb on - strand, within BWI76_RS13390 at 2791.948 kb on - strand, within BWI76_RS13390 at 2792.004 kb on + strand, within BWI76_RS13390 at 2792.458 kb on + strand, within BWI76_RS13390 at 2792.540 kb on + strand at 2792.548 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,790,470 + BWI76_RS13375 0.70 +1.0 2,791,123 + BWI76_RS13380 0.25 -2.1 2,791,232 + BWI76_RS13380 0.72 -0.9 2,791,348 + -1.3 2,791,609 + -1.1 2,791,672 + +0.8 2,791,692 + BWI76_RS13390 0.10 +0.7 2,791,692 + BWI76_RS13390 0.10 -1.6 2,791,700 - BWI76_RS13390 0.11 -1.7 2,791,742 - BWI76_RS13390 0.15 -0.2 2,791,948 - BWI76_RS13390 0.35 +0.0 2,792,004 + BWI76_RS13390 0.41 +0.4 2,792,458 + BWI76_RS13390 0.86 +0.1 2,792,540 + +0.2 2,792,548 - +0.2
Or see this region's nucleotide sequence