Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09195 and BWI76_RS09200 are separated by 10 nucleotides BWI76_RS09200 and BWI76_RS09205 are separated by 11 nucleotides BWI76_RS09205 and BWI76_RS09210 are separated by 125 nucleotides BWI76_RS09210 and BWI76_RS09215 are separated by 32 nucleotides
BWI76_RS09195: BWI76_RS09195 - N-acetyltransferase, at 1,940,932 to 1,942,005
_RS09195
BWI76_RS09200: BWI76_RS09200 - hypothetical protein, at 1,942,016 to 1,942,600
_RS09200
BWI76_RS09205: BWI76_RS09205 - phage repressor protein CI, at 1,942,612 to 1,943,172
_RS09205
BWI76_RS09210: BWI76_RS09210 - hypothetical protein, at 1,943,298 to 1,943,519
_RS09210
BWI76_RS09215: BWI76_RS09215 - phage regulatory CII family protein, at 1,943,552 to 1,944,061
_RS09215
Position (kb)
1942
1943 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1941.512 kb on - strand at 1941.567 kb on - strand, within BWI76_RS09195 at 1941.882 kb on - strand, within BWI76_RS09195 at 1942.098 kb on + strand, within BWI76_RS09200 at 1942.282 kb on - strand, within BWI76_RS09200 at 1942.420 kb on + strand, within BWI76_RS09200 at 1942.420 kb on + strand, within BWI76_RS09200 at 1942.420 kb on + strand, within BWI76_RS09200 at 1942.420 kb on + strand, within BWI76_RS09200 at 1942.428 kb on - strand, within BWI76_RS09200 at 1942.428 kb on - strand, within BWI76_RS09200 at 1942.430 kb on + strand, within BWI76_RS09200 at 1942.430 kb on + strand, within BWI76_RS09200 at 1942.438 kb on - strand, within BWI76_RS09200 at 1942.438 kb on - strand, within BWI76_RS09200 at 1942.438 kb on - strand, within BWI76_RS09200 at 1942.535 kb on + strand, within BWI76_RS09200 at 1942.535 kb on + strand, within BWI76_RS09200 at 1942.543 kb on - strand at 1942.543 kb on - strand at 1942.543 kb on - strand at 1942.543 kb on - strand at 1942.545 kb on + strand at 1942.545 kb on + strand at 1942.545 kb on + strand at 1942.545 kb on + strand at 1942.545 kb on + strand at 1942.545 kb on + strand at 1942.545 kb on + strand at 1942.545 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.553 kb on - strand at 1942.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,941,512 - +1.6 1,941,567 - BWI76_RS09195 0.59 -1.3 1,941,882 - BWI76_RS09195 0.88 +0.3 1,942,098 + BWI76_RS09200 0.14 -2.6 1,942,282 - BWI76_RS09200 0.45 -3.9 1,942,420 + BWI76_RS09200 0.69 -2.7 1,942,420 + BWI76_RS09200 0.69 -1.9 1,942,420 + BWI76_RS09200 0.69 +0.0 1,942,420 + BWI76_RS09200 0.69 -1.7 1,942,428 - BWI76_RS09200 0.70 -1.3 1,942,428 - BWI76_RS09200 0.70 +1.3 1,942,430 + BWI76_RS09200 0.71 +0.9 1,942,430 + BWI76_RS09200 0.71 -0.4 1,942,438 - BWI76_RS09200 0.72 -0.7 1,942,438 - BWI76_RS09200 0.72 -3.0 1,942,438 - BWI76_RS09200 0.72 -1.3 1,942,535 + BWI76_RS09200 0.89 -0.4 1,942,535 + BWI76_RS09200 0.89 -0.7 1,942,543 - +0.0 1,942,543 - -0.3 1,942,543 - -1.4 1,942,543 - -1.4 1,942,545 + -0.1 1,942,545 + +0.5 1,942,545 + -2.1 1,942,545 + +0.6 1,942,545 + +0.7 1,942,545 + -1.6 1,942,545 + -0.4 1,942,545 - -0.6 1,942,553 - -0.2 1,942,553 - +0.0 1,942,553 - -1.1 1,942,553 - +0.6 1,942,553 - +0.6 1,942,553 - -1.0 1,942,553 - +1.6 1,942,553 - -3.3 1,942,553 - +0.0 1,942,553 - -0.4 1,942,553 - -1.2 1,942,553 - +0.2 1,942,553 - +0.0 1,942,553 - -1.1 1,942,589 - -1.4
Or see this region's nucleotide sequence