Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12610 and BWI76_RS12615 are separated by 65 nucleotides BWI76_RS12615 and BWI76_RS12620 are separated by 158 nucleotides
BWI76_RS12610: BWI76_RS12610 - LysR family transcriptional regulator, at 2,631,999 to 2,632,883
_RS12610
BWI76_RS12615: BWI76_RS12615 - LysR family transcriptional regulator, at 2,632,949 to 2,633,860
_RS12615
BWI76_RS12620: BWI76_RS12620 - 2-nitropropane dioxygenase, at 2,634,019 to 2,634,999
_RS12620
Position (kb)
2632
2633
2634 Strain fitness (log2 ratio)
-1
0
1 at 2632.089 kb on - strand, within BWI76_RS12610 at 2632.100 kb on - strand, within BWI76_RS12610 at 2632.723 kb on - strand, within BWI76_RS12610 at 2632.908 kb on - strand at 2633.143 kb on - strand, within BWI76_RS12615 at 2633.145 kb on + strand, within BWI76_RS12615 at 2633.596 kb on + strand, within BWI76_RS12615 at 2633.609 kb on - strand, within BWI76_RS12615 at 2633.721 kb on + strand, within BWI76_RS12615 at 2633.726 kb on + strand, within BWI76_RS12615 at 2633.729 kb on - strand, within BWI76_RS12615 at 2633.954 kb on + strand at 2633.962 kb on - strand at 2634.002 kb on - strand at 2634.265 kb on - strand, within BWI76_RS12620 at 2634.265 kb on - strand, within BWI76_RS12620 at 2634.347 kb on + strand, within BWI76_RS12620 at 2634.382 kb on - strand, within BWI76_RS12620 at 2634.382 kb on - strand, within BWI76_RS12620 at 2634.382 kb on - strand, within BWI76_RS12620 at 2634.392 kb on - strand, within BWI76_RS12620 at 2634.621 kb on + strand, within BWI76_RS12620
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,632,089 - BWI76_RS12610 0.10 -0.4 2,632,100 - BWI76_RS12610 0.11 -0.9 2,632,723 - BWI76_RS12610 0.82 -0.1 2,632,908 - +0.5 2,633,143 - BWI76_RS12615 0.21 +0.5 2,633,145 + BWI76_RS12615 0.21 +0.4 2,633,596 + BWI76_RS12615 0.71 -0.8 2,633,609 - BWI76_RS12615 0.72 +1.2 2,633,721 + BWI76_RS12615 0.85 +1.0 2,633,726 + BWI76_RS12615 0.85 -0.2 2,633,729 - BWI76_RS12615 0.86 +0.6 2,633,954 + +0.3 2,633,962 - +0.1 2,634,002 - -0.6 2,634,265 - BWI76_RS12620 0.25 +0.9 2,634,265 - BWI76_RS12620 0.25 -0.2 2,634,347 + BWI76_RS12620 0.33 +0.4 2,634,382 - BWI76_RS12620 0.37 +0.5 2,634,382 - BWI76_RS12620 0.37 +0.1 2,634,382 - BWI76_RS12620 0.37 -1.4 2,634,392 - BWI76_RS12620 0.38 -0.0 2,634,621 + BWI76_RS12620 0.61 +0.9
Or see this region's nucleotide sequence