Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12360

Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
2,580,866	+				-0.3
2,580,874	-				-1.7
2,580,894	+				-0.8
2,580,915	+				-0.7
2,581,103	-				-2.5
2,581,109	+				+0.8
2,581,117	-				-1.8
2,581,117	-				+0.2
2,581,142	+				-2.2
2,581,198	+				-1.8
2,581,230	+				-0.7
2,581,262	-				-1.3
2,581,323	+				-1.3
2,581,326	+				-2.0
2,581,327	+				-0.9
2,581,327	+				-1.6
2,581,328	+				-0.6
2,581,331	-				-2.4
2,581,331	-				-1.9
2,581,334	-				-1.8
2,581,336	-				-0.9
2,581,336	-				-1.9
2,581,337	+				-1.1
2,581,337	+				-1.6
2,581,337	+				-1.3
2,581,383	+				-2.0
2,581,383	+				-1.5
2,581,389	+				-2.1
2,581,395	+				-2.0
2,581,395	+				-2.0
2,581,395	+				-0.0
2,581,395	+				-1.2
2,581,395	+				-1.3
2,581,395	+				-1.5
2,581,395	+				-0.5
2,581,395	+				-0.8
2,581,395	+				+0.7
2,581,395	+				-0.5
2,581,395	+				-1.4
2,581,395	+				-0.6
2,581,403	+				-0.1
2,581,403	-				-1.3
2,581,403	-				-1.4
2,581,403	-				-0.8
2,581,403	-				-0.5
2,581,403	-				-1.5
2,581,403	-				-0.7
2,581,403	-				-0.7
2,581,405	+				-1.7
2,581,405	+				+0.4
2,581,405	+				-0.2
2,581,405	+				-0.9
2,581,405	+				-2.2
2,581,405	+				-1.2
2,581,413	-				-2.4
2,581,413	-				-0.7
2,581,413	-				-1.7
2,581,413	-				+0.5
2,581,413	-				-0.9
2,581,413	-				-0.7
2,581,426	-				+0.8
2,581,451	+				-1.2
2,581,451	+				-1.6
2,581,451	+				-1.6
2,581,451	+				-1.2
2,581,451	+				-2.1
2,581,451	+				-0.8
2,581,451	+				-1.2
2,581,451	+				-0.6
2,581,451	+				-0.4
2,581,451	+				-2.8
2,581,451	+				-1.3
2,581,451	+				-1.0
2,581,451	+				-1.2
2,581,451	+				-1.1
2,581,451	+				-1.3
2,581,451	+				+0.5
2,581,451	+				-0.1
2,581,451	+				-0.7
2,581,451	+				-2.0
2,581,451	+				-1.1
2,581,459	-				-1.2
2,581,459	-				-1.6
2,581,459	-				-0.2
2,581,459	-				-0.6
2,581,459	-				-1.7
2,581,459	-				-1.6
2,581,459	-				-0.8
2,581,459	-				-0.5
2,581,459	-				-2.5
2,581,459	-				+0.4
2,581,459	-				-1.9
2,581,459	-				-3.8
2,581,459	-				+0.3
2,581,459	-				-2.3
2,581,459	-				-1.5
2,581,459	-				-1.7
2,581,459	-				-3.6
2,581,513	+				-0.8
2,581,513	+				-1.6
2,581,513	+				-1.0
2,581,513	+				-1.3
2,581,519	+				+0.3
2,581,520	+				-0.6
2,581,528	-				-1.5
2,581,535	-				-0.1
2,581,557	+				+0.1
2,581,563	+				-2.8
2,581,602	+				-1.4
2,581,605	+				-0.1
2,581,663	-				-0.2
2,581,683	+				-0.9
2,581,684	+				-0.4
2,581,702	-				-2.4
2,581,802	+				-1.3
2,581,802	+				-1.0
2,581,825	+				-1.2
2,581,827	+				-0.5
2,581,827	+				-1.2
2,581,827	+				-1.0
2,581,840	-				-3.0
2,581,884	+				-0.3
2,581,884	+				-0.3
2,581,884	+				-1.2
2,581,884	+				-2.3
2,581,892	+				-0.6
2,581,892	+				+0.8
2,581,892	+				-1.1
2,581,892	+				-1.0
2,581,892	+				-1.0
2,581,893	-				-1.2
2,581,894	+				+0.0
2,581,980	+		BWI76_RS12360	0.21	-1.2
2,581,992	-		BWI76_RS12360	0.23	+0.2
2,582,007	+		BWI76_RS12360	0.25	-2.9
2,582,136	-		BWI76_RS12360	0.46	-1.4
2,582,152	+		BWI76_RS12360	0.49	+0.6
2,582,240	-		BWI76_RS12360	0.63	+0.8
2,582,308	+		BWI76_RS12360	0.75	-0.5
2,582,353	-		BWI76_RS12360	0.82	-1.0
2,582,367	+		BWI76_RS12360	0.84	-0.6
2,582,367	+		BWI76_RS12360	0.84	-1.5
2,582,367	+		BWI76_RS12360	0.84	-1.8
2,582,372	+		BWI76_RS12360	0.85	-2.1
2,582,375	-		BWI76_RS12360	0.86	-0.7
2,582,377	+		BWI76_RS12360	0.86	-0.5
2,582,385	-		BWI76_RS12360	0.87	-0.2
2,582,385	-		BWI76_RS12360	0.87	-0.4
2,582,387	+		BWI76_RS12360	0.88	-1.1
2,582,387	+		BWI76_RS12360	0.88	-0.8
2,582,395	-		BWI76_RS12360	0.89	-0.4
2,582,472	-				+0.8
2,582,526	-				-1.2
2,582,538	+				-0.4
2,582,552	-				-0.2
2,582,562	-				-0.7
2,582,592	+				-1.5
2,582,603	+				-0.6
2,582,611	-				-0.1
2,582,611	-				-0.6
2,582,611	-				-0.1
2,582,613	+				-0.7
2,582,613	+				-0.5
2,582,613	+				-1.7
2,582,613	+				-0.9
2,582,613	+				-1.5
2,582,613	+				-0.5
2,582,613	+				-0.1
2,582,613	+				-1.4
2,582,613	+				-0.4
2,582,613	+				+0.2
2,582,613	+				+0.6
2,582,613	+				-1.3
2,582,613	+				+0.5
2,582,621	-				-0.6
2,582,621	-				-0.7
2,582,621	-				-0.4
2,582,621	-				-2.2
2,582,621	-				-0.0
2,582,621	-				-0.0
2,582,621	-				+0.0
2,582,621	-				-0.5
2,582,621	-				-0.2
2,582,621	-				-0.8
2,582,621	-				-1.5
2,582,621	-				+0.0
2,582,621	-				-1.8
2,582,626	-				-0.0
2,582,629	+				-0.5
2,582,629	+				-2.5
2,582,629	+				+0.8
2,582,629	+				-0.1
2,582,629	+				-2.5
2,582,637	-				+0.4
2,582,637	-				-0.7
2,582,637	-				-0.6
2,582,637	-				-3.1
2,582,637	-				-0.3
2,582,637	-				-0.9
2,582,637	-				+0.1
2,582,637	-				-0.3
2,582,640	+				-0.7
2,582,643	-				-1.0
2,582,750	-		BWI76_RS12365	0.23	-0.6
2,582,750	-		BWI76_RS12365	0.23	-0.4
2,582,784	+		BWI76_RS12365	0.27	-0.7
2,582,792	-		BWI76_RS12365	0.28	-2.2
2,582,792	-		BWI76_RS12365	0.28	-0.0
2,582,807	-		BWI76_RS12365	0.30	-0.9
2,582,871	+		BWI76_RS12365	0.38	-0.7
2,582,871	+		BWI76_RS12365	0.38	-0.5
2,582,871	+		BWI76_RS12365	0.38	-0.6
2,582,871	+		BWI76_RS12365	0.38	-0.3
2,582,871	+		BWI76_RS12365	0.38	+0.8
2,582,871	+		BWI76_RS12365	0.38	+1.1
2,582,871	+		BWI76_RS12365	0.38	-0.4
2,582,871	+		BWI76_RS12365	0.38	-0.8
2,582,889	-		BWI76_RS12365	0.41	-0.5
2,582,917	+		BWI76_RS12365	0.44	-0.5
2,583,108	-		BWI76_RS12365	0.68	-1.0
2,583,253	+		BWI76_RS12365	0.86	-1.2
2,583,253	+		BWI76_RS12365	0.86	-0.7
2,583,253	+		BWI76_RS12365	0.86	-2.7
2,583,261	-		BWI76_RS12365	0.87	-1.6
2,583,261	-		BWI76_RS12365	0.87	-0.7
2,583,278	+		BWI76_RS12365	0.89	-0.9
2,583,316	-				+0.3
2,583,321	-				-0.2