Strain Fitness in Shewanella oneidensis MR-1 around SO1523

Experiment: Ferric citrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1522 and SO1523 are separated by 733 nucleotidesSO1523 and grpE are separated by 99 nucleotidesgrpE and dxs are separated by 117 nucleotides SO1522: SO1522 - D,L-lactate/pyruvate symporter LctP2 (from data), at 1,597,090 to 1,598,733 SO1522 SO1523: SO1523 - conserved hypothetical protein (NCBI ptt file), at 1,599,467 to 1,600,345 SO1523 SO1524: grpE - heat shock protein GrpE (NCBI ptt file), at 1,600,445 to 1,601,065 grpE SO1525: dxs - deoxyxylulose-5-phosphate synthase (NCBI ptt file), at 1,601,183 to 1,603,051 dxs Position (kb) 1599 1600 1601Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1598.572 kb on + strandat 1598.572 kb on + strandat 1598.599 kb on + strandat 1598.599 kb on + strandat 1598.641 kb on - strandat 1598.690 kb on - strandat 1598.694 kb on + strandat 1598.708 kb on - strandat 1598.735 kb on - strandat 1598.739 kb on + strandat 1598.747 kb on - strandat 1598.747 kb on - strandat 1598.752 kb on - strandat 1598.761 kb on - strandat 1598.854 kb on + strandat 1598.854 kb on + strandat 1598.862 kb on - strandat 1598.870 kb on - strandat 1598.878 kb on + strandat 1598.878 kb on + strandat 1598.886 kb on - strandat 1598.938 kb on - strandat 1598.940 kb on - strandat 1598.953 kb on - strandat 1599.016 kb on - strandat 1599.265 kb on - strandat 1599.265 kb on - strandat 1599.272 kb on - strandat 1599.280 kb on + strandat 1601.014 kb on + strandat 1601.066 kb on + strandat 1601.199 kb on + strandat 1601.207 kb on - strandat 1601.207 kb on - strandat 1601.207 kb on - strandat 1601.207 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor
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1,598,572 + -2.4
1,598,572 + -1.8
1,598,599 + -3.2
1,598,599 + -1.6
1,598,641 - -0.7
1,598,690 - -2.9
1,598,694 + -3.0
1,598,708 - -2.4
1,598,735 - -3.0
1,598,739 + -1.6
1,598,747 - -1.4
1,598,747 - -0.0
1,598,752 - -0.8
1,598,761 - -3.5
1,598,854 + -1.9
1,598,854 + -3.6
1,598,862 - +0.1
1,598,870 - +0.3
1,598,878 + -1.2
1,598,878 + -0.9
1,598,886 - +1.8
1,598,938 - -2.0
1,598,940 - -1.7
1,598,953 - -0.8
1,599,016 - -3.2
1,599,265 - +0.3
1,599,265 - +0.5
1,599,272 - -1.0
1,599,280 + -2.5
1,601,014 + -0.6
1,601,066 + -1.2
1,601,199 + +1.1
1,601,207 - +0.7
1,601,207 - -1.2
1,601,207 - -1.4
1,601,207 - -1.9

Or see this region's nucleotide sequence