Strain Fitness in Shewanella oneidensis MR-1 around SO1825

Experiment: Ferric citrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1824 and SO1825 overlap by 1 nucleotidesSO1825 and exbB2 are separated by 44 nucleotidesexbB2 and exbD2 are separated by 13 nucleotidesexbD2 and tonB2 are separated by 1 nucleotides SO1824: SO1824 - conserved hypothetical protein (NCBI ptt file), at 1,917,616 to 1,918,281 SO1824 SO1825: SO1825 - MotA/TolQ/ExbB proton channel family protein (NCBI ptt file), at 1,918,281 to 1,919,636 SO1825 SO1826: exbB2 - TonB system transport protein ExbB2 (NCBI ptt file), at 1,919,681 to 1,920,163 exbB2 SO1827: exbD2 - TonB system transport protein ExbD2 (NCBI ptt file), at 1,920,177 to 1,920,581 exbD2 SO1828: tonB2 - TonB2 protein (NCBI ptt file), at 1,920,583 to 1,921,206 tonB2 Position (kb) 1918 1919 1920Strain fitness (log2 ratio) -1 0 1at 1917.354 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor
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1,917,354 + -1.5

Or see this region's nucleotide sequence