Experiment: Betaine (C)(N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24285 and PFLU_RS24290 are separated by 61 nucleotides PFLU_RS24290 and PFLU_RS24295 are separated by 176 nucleotides PFLU_RS24295 and PFLU_RS24300 are separated by 114 nucleotides PFLU_RS24300 and PFLU_RS24305 are separated by 44 nucleotides
PFLU_RS24285: PFLU_RS24285 - MFS transporter, at 5,438,119 to 5,439,438
_RS24285
PFLU_RS24290: PFLU_RS24290 - membrane protein, at 5,439,500 to 5,440,255
_RS24290
PFLU_RS24295: PFLU_RS24295 - flavin reductase family protein, at 5,440,432 to 5,441,064
_RS24295
PFLU_RS24300: PFLU_RS24300 - hypothetical protein, at 5,441,179 to 5,441,424
_RS24300
PFLU_RS24305: PFLU_RS24305 - antibiotic biosynthesis monooxygenase, at 5,441,469 to 5,441,810
_RS24305
Position (kb) 5440
5441
5442 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5439.436 kb on + strand at 5439.546 kb on + strand at 5439.546 kb on + strand at 5439.546 kb on + strand at 5439.547 kb on - strand at 5439.547 kb on - strand at 5439.547 kb on - strand at 5439.729 kb on + strand, within PFLU_RS24290 at 5439.729 kb on + strand, within PFLU_RS24290 at 5439.729 kb on + strand, within PFLU_RS24290 at 5439.729 kb on + strand, within PFLU_RS24290 at 5439.729 kb on + strand, within PFLU_RS24290 at 5439.729 kb on + strand, within PFLU_RS24290 at 5439.729 kb on + strand, within PFLU_RS24290 at 5439.730 kb on - strand, within PFLU_RS24290 at 5439.730 kb on - strand, within PFLU_RS24290 at 5439.730 kb on - strand, within PFLU_RS24290 at 5439.730 kb on - strand, within PFLU_RS24290 at 5439.864 kb on + strand, within PFLU_RS24290 at 5439.864 kb on + strand, within PFLU_RS24290 at 5439.865 kb on - strand, within PFLU_RS24290 at 5439.865 kb on - strand, within PFLU_RS24290 at 5439.865 kb on - strand, within PFLU_RS24290 at 5440.021 kb on + strand, within PFLU_RS24290 at 5440.021 kb on + strand, within PFLU_RS24290 at 5440.022 kb on - strand, within PFLU_RS24290 at 5440.022 kb on - strand, within PFLU_RS24290 at 5440.059 kb on + strand, within PFLU_RS24290 at 5440.059 kb on + strand, within PFLU_RS24290 at 5440.059 kb on + strand, within PFLU_RS24290 at 5440.060 kb on - strand, within PFLU_RS24290 at 5440.074 kb on + strand, within PFLU_RS24290 at 5440.074 kb on + strand, within PFLU_RS24290 at 5440.074 kb on + strand, within PFLU_RS24290 at 5440.074 kb on + strand, within PFLU_RS24290 at 5440.075 kb on - strand, within PFLU_RS24290 at 5440.075 kb on - strand, within PFLU_RS24290 at 5440.075 kb on - strand, within PFLU_RS24290 at 5440.075 kb on - strand, within PFLU_RS24290 at 5440.075 kb on - strand, within PFLU_RS24290 at 5440.075 kb on - strand, within PFLU_RS24290 at 5440.075 kb on - strand, within PFLU_RS24290 at 5440.146 kb on + strand, within PFLU_RS24290 at 5440.146 kb on + strand, within PFLU_RS24290 at 5440.260 kb on + strand at 5440.260 kb on + strand at 5440.260 kb on + strand at 5440.261 kb on - strand at 5440.261 kb on - strand at 5440.333 kb on - strand at 5440.333 kb on - strand at 5440.394 kb on - strand at 5440.394 kb on - strand at 5440.394 kb on - strand at 5440.394 kb on - strand at 5440.453 kb on + strand at 5440.453 kb on + strand at 5440.453 kb on + strand at 5440.453 kb on + strand at 5440.453 kb on + strand at 5440.454 kb on - strand at 5440.454 kb on - strand at 5440.454 kb on - strand at 5440.454 kb on - strand at 5440.454 kb on - strand at 5440.570 kb on + strand, within PFLU_RS24295 at 5440.571 kb on - strand, within PFLU_RS24295 at 5440.571 kb on - strand, within PFLU_RS24295 at 5440.571 kb on - strand, within PFLU_RS24295 at 5440.594 kb on + strand, within PFLU_RS24295 at 5440.594 kb on + strand, within PFLU_RS24295 at 5440.594 kb on + strand, within PFLU_RS24295 at 5440.594 kb on + strand, within PFLU_RS24295 at 5440.594 kb on + strand, within PFLU_RS24295 at 5440.594 kb on + strand, within PFLU_RS24295 at 5440.594 kb on + strand, within PFLU_RS24295 at 5440.594 kb on + strand, within PFLU_RS24295 at 5440.595 kb on - strand, within PFLU_RS24295 at 5440.595 kb on - strand, within PFLU_RS24295 at 5440.595 kb on - strand, within PFLU_RS24295 at 5440.595 kb on - strand, within PFLU_RS24295 at 5440.595 kb on - strand, within PFLU_RS24295 at 5440.595 kb on - strand, within PFLU_RS24295 at 5440.951 kb on + strand, within PFLU_RS24295 at 5440.951 kb on + strand, within PFLU_RS24295 at 5441.002 kb on + strand at 5441.003 kb on - strand at 5441.003 kb on - strand at 5441.038 kb on + strand at 5441.038 kb on + strand at 5441.039 kb on - strand at 5441.039 kb on - strand at 5441.039 kb on - strand at 5441.039 kb on - strand at 5441.039 kb on - strand at 5441.039 kb on - strand at 5441.134 kb on - strand at 5441.134 kb on - strand at 5441.140 kb on + strand at 5441.140 kb on + strand at 5441.140 kb on + strand at 5441.140 kb on - strand at 5441.141 kb on - strand at 5441.141 kb on - strand at 5441.180 kb on + strand at 5441.180 kb on + strand at 5441.180 kb on + strand at 5441.180 kb on + strand at 5441.181 kb on - strand at 5441.360 kb on + strand, within PFLU_RS24300 at 5441.361 kb on - strand, within PFLU_RS24300 at 5441.380 kb on + strand, within PFLU_RS24300 at 5441.380 kb on + strand, within PFLU_RS24300 at 5441.380 kb on + strand, within PFLU_RS24300 at 5441.381 kb on - strand, within PFLU_RS24300 at 5441.381 kb on - strand, within PFLU_RS24300 at 5441.381 kb on - strand, within PFLU_RS24300 at 5441.415 kb on + strand at 5441.415 kb on + strand at 5441.415 kb on + strand at 5441.415 kb on + strand at 5441.415 kb on + strand at 5441.415 kb on + strand at 5441.416 kb on - strand at 5441.416 kb on - strand at 5441.416 kb on - strand at 5441.416 kb on - strand at 5441.461 kb on - strand at 5441.488 kb on + strand at 5441.488 kb on + strand at 5441.489 kb on - strand at 5441.489 kb on - strand at 5441.498 kb on - strand at 5441.602 kb on + strand, within PFLU_RS24305 at 5441.602 kb on + strand, within PFLU_RS24305 at 5441.603 kb on - strand, within PFLU_RS24305 at 5441.603 kb on - strand, within PFLU_RS24305 at 5441.783 kb on + strand at 5441.783 kb on + strand at 5441.783 kb on + strand at 5441.784 kb on - strand at 5441.784 kb on - strand at 5441.784 kb on - strand at 5441.924 kb on - strand at 5441.924 kb on - strand at 5441.924 kb on - strand at 5441.947 kb on + strand at 5441.947 kb on + strand at 5441.974 kb on - strand at 5441.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Betaine (C)(N); with MOPS remove 5,439,436 + -0.8 5,439,546 + +1.7 5,439,546 + -1.8 5,439,546 + +1.0 5,439,547 - -1.3 5,439,547 - +0.6 5,439,547 - -1.9 5,439,729 + PFLU_RS24290 0.30 +0.1 5,439,729 + PFLU_RS24290 0.30 +0.9 5,439,729 + PFLU_RS24290 0.30 -0.8 5,439,729 + PFLU_RS24290 0.30 -1.6 5,439,729 + PFLU_RS24290 0.30 +0.1 5,439,729 + PFLU_RS24290 0.30 +0.2 5,439,729 + PFLU_RS24290 0.30 +0.4 5,439,730 - PFLU_RS24290 0.30 -1.3 5,439,730 - PFLU_RS24290 0.30 +0.6 5,439,730 - PFLU_RS24290 0.30 +0.7 5,439,730 - PFLU_RS24290 0.30 +1.1 5,439,864 + PFLU_RS24290 0.48 -0.4 5,439,864 + PFLU_RS24290 0.48 -0.4 5,439,865 - PFLU_RS24290 0.48 +0.7 5,439,865 - PFLU_RS24290 0.48 +0.8 5,439,865 - PFLU_RS24290 0.48 -0.2 5,440,021 + PFLU_RS24290 0.69 +1.6 5,440,021 + PFLU_RS24290 0.69 +1.4 5,440,022 - PFLU_RS24290 0.69 +1.0 5,440,022 - PFLU_RS24290 0.69 +0.2 5,440,059 + PFLU_RS24290 0.74 -1.1 5,440,059 + PFLU_RS24290 0.74 -0.3 5,440,059 + PFLU_RS24290 0.74 +0.8 5,440,060 - PFLU_RS24290 0.74 -1.1 5,440,074 + PFLU_RS24290 0.76 +1.7 5,440,074 + PFLU_RS24290 0.76 +2.7 5,440,074 + PFLU_RS24290 0.76 -1.7 5,440,074 + PFLU_RS24290 0.76 +0.6 5,440,075 - PFLU_RS24290 0.76 -0.8 5,440,075 - PFLU_RS24290 0.76 +0.0 5,440,075 - PFLU_RS24290 0.76 -0.5 5,440,075 - PFLU_RS24290 0.76 +1.2 5,440,075 - PFLU_RS24290 0.76 +1.3 5,440,075 - PFLU_RS24290 0.76 +0.2 5,440,075 - PFLU_RS24290 0.76 -0.6 5,440,146 + PFLU_RS24290 0.85 +0.5 5,440,146 + PFLU_RS24290 0.85 -1.5 5,440,260 + +1.1 5,440,260 + +1.2 5,440,260 + +0.5 5,440,261 - +0.4 5,440,261 - -0.3 5,440,333 - +0.2 5,440,333 - +0.3 5,440,394 - +1.7 5,440,394 - +0.9 5,440,394 - -1.2 5,440,394 - -0.5 5,440,453 + -0.3 5,440,453 + -0.2 5,440,453 + -0.8 5,440,453 + +1.7 5,440,453 + +1.3 5,440,454 - -0.0 5,440,454 - -0.8 5,440,454 - +1.4 5,440,454 - -0.2 5,440,454 - -0.5 5,440,570 + PFLU_RS24295 0.22 +0.5 5,440,571 - PFLU_RS24295 0.22 -0.1 5,440,571 - PFLU_RS24295 0.22 -0.3 5,440,571 - PFLU_RS24295 0.22 +0.5 5,440,594 + PFLU_RS24295 0.26 +0.8 5,440,594 + PFLU_RS24295 0.26 -0.1 5,440,594 + PFLU_RS24295 0.26 -0.6 5,440,594 + PFLU_RS24295 0.26 +1.6 5,440,594 + PFLU_RS24295 0.26 -0.6 5,440,594 + PFLU_RS24295 0.26 +0.7 5,440,594 + PFLU_RS24295 0.26 +0.4 5,440,594 + PFLU_RS24295 0.26 +0.3 5,440,595 - PFLU_RS24295 0.26 -0.8 5,440,595 - PFLU_RS24295 0.26 +0.7 5,440,595 - PFLU_RS24295 0.26 +1.0 5,440,595 - PFLU_RS24295 0.26 -0.1 5,440,595 - PFLU_RS24295 0.26 +1.0 5,440,595 - PFLU_RS24295 0.26 -0.2 5,440,951 + PFLU_RS24295 0.82 -1.2 5,440,951 + PFLU_RS24295 0.82 -0.1 5,441,002 + +0.0 5,441,003 - +0.1 5,441,003 - +0.3 5,441,038 + -0.3 5,441,038 + -0.1 5,441,039 - -0.3 5,441,039 - +0.9 5,441,039 - -0.9 5,441,039 - +0.5 5,441,039 - +1.2 5,441,039 - +2.7 5,441,134 - -2.1 5,441,134 - +0.4 5,441,140 + +1.7 5,441,140 + -0.6 5,441,140 + +0.1 5,441,140 - -0.1 5,441,141 - -0.6 5,441,141 - -1.3 5,441,180 + +1.0 5,441,180 + -0.1 5,441,180 + -0.6 5,441,180 + +1.0 5,441,181 - +1.2 5,441,360 + PFLU_RS24300 0.74 +0.8 5,441,361 - PFLU_RS24300 0.74 -0.1 5,441,380 + PFLU_RS24300 0.82 +1.2 5,441,380 + PFLU_RS24300 0.82 +1.0 5,441,380 + PFLU_RS24300 0.82 +0.6 5,441,381 - PFLU_RS24300 0.82 +0.6 5,441,381 - PFLU_RS24300 0.82 +1.1 5,441,381 - PFLU_RS24300 0.82 +1.3 5,441,415 + +0.6 5,441,415 + +0.4 5,441,415 + +1.2 5,441,415 + -1.3 5,441,415 + -0.5 5,441,415 + +0.1 5,441,416 - -1.7 5,441,416 - +3.5 5,441,416 - +2.7 5,441,416 - -2.3 5,441,461 - +1.2 5,441,488 + -1.2 5,441,488 + -0.5 5,441,489 - -0.6 5,441,489 - -0.1 5,441,498 - -0.1 5,441,602 + PFLU_RS24305 0.39 +0.2 5,441,602 + PFLU_RS24305 0.39 -0.4 5,441,603 - PFLU_RS24305 0.39 +0.4 5,441,603 - PFLU_RS24305 0.39 +1.1 5,441,783 + +0.5 5,441,783 + -1.1 5,441,783 + -0.1 5,441,784 - -0.1 5,441,784 - +0.4 5,441,784 - +0.1 5,441,924 - -0.1 5,441,924 - -0.4 5,441,924 - -0.0 5,441,947 + +0.1 5,441,947 + -1.4 5,441,974 - -0.6 5,441,974 - +0.9
Or see this region's nucleotide sequence