Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18200

Experiment: Betaine (C)(N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS18195 and PFLU_RS18200 are separated by 21 nucleotidesPFLU_RS18200 and PFLU_RS18205 are separated by 44 nucleotidesPFLU_RS18205 and PFLU_RS18210 are separated by 90 nucleotides PFLU_RS18195: PFLU_RS18195 - sugar-binding transcriptional regulator, at 4,129,065 to 4,130,018 _RS18195 PFLU_RS18200: PFLU_RS18200 - transaldolase, at 4,130,040 to 4,130,963 _RS18200 PFLU_RS18205: PFLU_RS18205 - aquaporin Z, at 4,131,008 to 4,131,721 _RS18205 PFLU_RS18210: PFLU_RS18210 - sugar transporter, at 4,131,812 to 4,132,996 _RS18210 Position (kb) 4130 4131Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4129.040 kb on + strandat 4129.040 kb on + strandat 4129.040 kb on + strandat 4129.040 kb on + strandat 4129.043 kb on + strandat 4129.043 kb on + strandat 4129.044 kb on - strandat 4129.044 kb on - strandat 4129.044 kb on - strandat 4129.045 kb on + strandat 4129.045 kb on + strandat 4129.046 kb on - strandat 4129.046 kb on - strandat 4129.046 kb on - strandat 4129.046 kb on - strandat 4129.046 kb on - strandat 4129.113 kb on + strandat 4129.113 kb on + strandat 4129.113 kb on + strandat 4129.116 kb on + strandat 4129.282 kb on - strand, within PFLU_RS18195at 4129.289 kb on - strand, within PFLU_RS18195at 4129.289 kb on - strand, within PFLU_RS18195at 4129.371 kb on + strand, within PFLU_RS18195at 4129.372 kb on - strand, within PFLU_RS18195at 4129.409 kb on + strand, within PFLU_RS18195at 4129.410 kb on - strand, within PFLU_RS18195at 4129.410 kb on - strand, within PFLU_RS18195at 4129.410 kb on - strand, within PFLU_RS18195at 4129.492 kb on + strand, within PFLU_RS18195at 4129.492 kb on + strand, within PFLU_RS18195at 4129.492 kb on + strand, within PFLU_RS18195at 4129.492 kb on + strand, within PFLU_RS18195at 4129.492 kb on + strand, within PFLU_RS18195at 4129.492 kb on + strand, within PFLU_RS18195at 4129.492 kb on + strand, within PFLU_RS18195at 4129.493 kb on - strand, within PFLU_RS18195at 4129.493 kb on - strand, within PFLU_RS18195at 4129.493 kb on - strand, within PFLU_RS18195at 4129.493 kb on - strand, within PFLU_RS18195at 4129.493 kb on - strand, within PFLU_RS18195at 4129.493 kb on - strand, within PFLU_RS18195at 4129.493 kb on - strand, within PFLU_RS18195at 4129.742 kb on + strand, within PFLU_RS18195at 4129.746 kb on + strand, within PFLU_RS18195at 4129.746 kb on + strand, within PFLU_RS18195at 4129.746 kb on + strand, within PFLU_RS18195at 4129.746 kb on + strand, within PFLU_RS18195at 4129.746 kb on + strand, within PFLU_RS18195at 4129.746 kb on + strand, within PFLU_RS18195at 4129.746 kb on + strand, within PFLU_RS18195at 4129.746 kb on + strand, within PFLU_RS18195at 4129.746 kb on + strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.747 kb on - strand, within PFLU_RS18195at 4129.749 kb on + strand, within PFLU_RS18195at 4129.749 kb on + strand, within PFLU_RS18195at 4129.750 kb on - strand, within PFLU_RS18195at 4129.750 kb on - strand, within PFLU_RS18195at 4129.750 kb on - strand, within PFLU_RS18195at 4129.812 kb on + strand, within PFLU_RS18195at 4129.812 kb on + strand, within PFLU_RS18195at 4129.813 kb on - strand, within PFLU_RS18195at 4129.813 kb on - strand, within PFLU_RS18195at 4130.016 kb on + strandat 4130.017 kb on - strandat 4130.182 kb on - strand, within PFLU_RS18200at 4130.182 kb on - strand, within PFLU_RS18200at 4130.182 kb on - strand, within PFLU_RS18200at 4130.276 kb on + strand, within PFLU_RS18200at 4130.276 kb on + strand, within PFLU_RS18200at 4130.373 kb on + strand, within PFLU_RS18200at 4130.373 kb on + strand, within PFLU_RS18200at 4130.373 kb on + strand, within PFLU_RS18200at 4130.374 kb on - strand, within PFLU_RS18200at 4130.565 kb on + strand, within PFLU_RS18200at 4130.565 kb on + strand, within PFLU_RS18200at 4130.565 kb on + strand, within PFLU_RS18200at 4130.565 kb on + strand, within PFLU_RS18200at 4130.566 kb on - strand, within PFLU_RS18200at 4130.566 kb on - strand, within PFLU_RS18200at 4130.566 kb on - strand, within PFLU_RS18200at 4130.566 kb on - strand, within PFLU_RS18200at 4130.566 kb on - strand, within PFLU_RS18200at 4130.566 kb on - strand, within PFLU_RS18200at 4130.566 kb on - strand, within PFLU_RS18200at 4130.566 kb on - strand, within PFLU_RS18200at 4130.598 kb on + strand, within PFLU_RS18200at 4130.599 kb on - strand, within PFLU_RS18200at 4130.643 kb on + strand, within PFLU_RS18200at 4130.643 kb on + strand, within PFLU_RS18200at 4130.643 kb on + strand, within PFLU_RS18200at 4130.643 kb on + strand, within PFLU_RS18200at 4130.644 kb on - strand, within PFLU_RS18200at 4130.644 kb on - strand, within PFLU_RS18200at 4130.644 kb on - strand, within PFLU_RS18200at 4130.649 kb on + strand, within PFLU_RS18200at 4130.649 kb on + strand, within PFLU_RS18200at 4130.649 kb on + strand, within PFLU_RS18200at 4130.650 kb on - strand, within PFLU_RS18200at 4130.650 kb on - strand, within PFLU_RS18200at 4130.650 kb on - strand, within PFLU_RS18200at 4130.650 kb on - strand, within PFLU_RS18200at 4130.650 kb on - strand, within PFLU_RS18200at 4130.650 kb on - strand, within PFLU_RS18200at 4130.650 kb on - strand, within PFLU_RS18200at 4130.652 kb on + strand, within PFLU_RS18200at 4130.652 kb on + strand, within PFLU_RS18200at 4130.652 kb on + strand, within PFLU_RS18200at 4130.652 kb on + strand, within PFLU_RS18200at 4130.652 kb on + strand, within PFLU_RS18200at 4130.652 kb on + strand, within PFLU_RS18200at 4130.653 kb on - strand, within PFLU_RS18200at 4130.653 kb on - strand, within PFLU_RS18200at 4130.653 kb on - strand, within PFLU_RS18200at 4130.653 kb on - strand, within PFLU_RS18200at 4130.653 kb on - strand, within PFLU_RS18200at 4130.653 kb on - strand, within PFLU_RS18200at 4130.653 kb on - strand, within PFLU_RS18200at 4130.961 kb on + strandat 4130.961 kb on + strandat 4130.961 kb on + strandat 4130.961 kb on + strandat 4130.962 kb on - strandat 4130.962 kb on - strandat 4130.962 kb on - strandat 4130.962 kb on - strandat 4130.962 kb on - strandat 4131.039 kb on - strandat 4131.039 kb on - strandat 4131.114 kb on + strand, within PFLU_RS18205at 4131.114 kb on + strand, within PFLU_RS18205at 4131.114 kb on + strand, within PFLU_RS18205at 4131.115 kb on - strand, within PFLU_RS18205at 4131.115 kb on - strand, within PFLU_RS18205at 4131.115 kb on - strand, within PFLU_RS18205at 4131.115 kb on - strand, within PFLU_RS18205at 4131.115 kb on - strand, within PFLU_RS18205at 4131.115 kb on - strand, within PFLU_RS18205at 4131.148 kb on + strand, within PFLU_RS18205at 4131.148 kb on + strand, within PFLU_RS18205at 4131.148 kb on + strand, within PFLU_RS18205at 4131.169 kb on + strand, within PFLU_RS18205at 4131.170 kb on - strand, within PFLU_RS18205at 4131.170 kb on - strand, within PFLU_RS18205at 4131.278 kb on + strand, within PFLU_RS18205at 4131.279 kb on - strand, within PFLU_RS18205at 4131.378 kb on - strand, within PFLU_RS18205at 4131.411 kb on + strand, within PFLU_RS18205at 4131.411 kb on + strand, within PFLU_RS18205at 4131.412 kb on - strand, within PFLU_RS18205at 4131.412 kb on - strand, within PFLU_RS18205at 4131.412 kb on - strand, within PFLU_RS18205at 4131.412 kb on - strand, within PFLU_RS18205at 4131.459 kb on + strand, within PFLU_RS18205at 4131.459 kb on + strand, within PFLU_RS18205at 4131.459 kb on + strand, within PFLU_RS18205at 4131.460 kb on - strand, within PFLU_RS18205at 4131.460 kb on - strand, within PFLU_RS18205at 4131.541 kb on + strand, within PFLU_RS18205at 4131.555 kb on + strand, within PFLU_RS18205at 4131.556 kb on - strand, within PFLU_RS18205at 4131.796 kb on + strandat 4131.796 kb on + strandat 4131.797 kb on - strandat 4131.797 kb on - strandat 4131.797 kb on - strandat 4131.797 kb on - strandat 4131.803 kb on + strandat 4131.803 kb on + strandat 4131.803 kb on + strandat 4131.804 kb on - strandat 4131.804 kb on - strandat 4131.804 kb on - strandat 4131.810 kb on + strandat 4131.821 kb on + strandat 4131.821 kb on + strandat 4131.821 kb on + strandat 4131.821 kb on + strandat 4131.821 kb on + strandat 4131.822 kb on - strandat 4131.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Betaine (C)(N); with MOPS
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4,129,040 + -0.8
4,129,040 + +0.2
4,129,040 + -0.2
4,129,040 + -1.8
4,129,043 + +0.2
4,129,043 + +0.1
4,129,044 - -0.6
4,129,044 - +1.4
4,129,044 - -2.5
4,129,045 + +0.5
4,129,045 + -0.3
4,129,046 - -1.6
4,129,046 - +0.9
4,129,046 - +1.2
4,129,046 - -1.1
4,129,046 - -0.6
4,129,113 + -1.2
4,129,113 + +1.8
4,129,113 + -0.7
4,129,116 + -1.0
4,129,282 - PFLU_RS18195 0.23 +0.9
4,129,289 - PFLU_RS18195 0.23 -0.5
4,129,289 - PFLU_RS18195 0.23 -1.1
4,129,371 + PFLU_RS18195 0.32 -1.0
4,129,372 - PFLU_RS18195 0.32 +1.4
4,129,409 + PFLU_RS18195 0.36 -1.7
4,129,410 - PFLU_RS18195 0.36 +0.7
4,129,410 - PFLU_RS18195 0.36 -3.4
4,129,410 - PFLU_RS18195 0.36 +1.3
4,129,492 + PFLU_RS18195 0.45 -0.4
4,129,492 + PFLU_RS18195 0.45 +1.9
4,129,492 + PFLU_RS18195 0.45 -0.4
4,129,492 + PFLU_RS18195 0.45 -0.4
4,129,492 + PFLU_RS18195 0.45 +0.1
4,129,492 + PFLU_RS18195 0.45 +0.6
4,129,492 + PFLU_RS18195 0.45 -0.8
4,129,493 - PFLU_RS18195 0.45 +1.2
4,129,493 - PFLU_RS18195 0.45 -0.6
4,129,493 - PFLU_RS18195 0.45 -1.1
4,129,493 - PFLU_RS18195 0.45 +0.5
4,129,493 - PFLU_RS18195 0.45 -0.1
4,129,493 - PFLU_RS18195 0.45 -0.1
4,129,493 - PFLU_RS18195 0.45 +1.3
4,129,742 + PFLU_RS18195 0.71 -0.5
4,129,746 + PFLU_RS18195 0.71 +0.1
4,129,746 + PFLU_RS18195 0.71 +1.0
4,129,746 + PFLU_RS18195 0.71 +0.6
4,129,746 + PFLU_RS18195 0.71 -0.9
4,129,746 + PFLU_RS18195 0.71 -0.1
4,129,746 + PFLU_RS18195 0.71 -1.8
4,129,746 + PFLU_RS18195 0.71 +0.6
4,129,746 + PFLU_RS18195 0.71 -2.4
4,129,746 + PFLU_RS18195 0.71 +0.8
4,129,747 - PFLU_RS18195 0.71 -1.6
4,129,747 - PFLU_RS18195 0.71 +1.8
4,129,747 - PFLU_RS18195 0.71 +1.8
4,129,747 - PFLU_RS18195 0.71 -1.0
4,129,747 - PFLU_RS18195 0.71 +0.9
4,129,747 - PFLU_RS18195 0.71 -0.5
4,129,747 - PFLU_RS18195 0.71 +1.6
4,129,747 - PFLU_RS18195 0.71 -0.3
4,129,747 - PFLU_RS18195 0.71 -1.1
4,129,747 - PFLU_RS18195 0.71 -2.0
4,129,747 - PFLU_RS18195 0.71 -0.7
4,129,747 - PFLU_RS18195 0.71 -1.1
4,129,749 + PFLU_RS18195 0.72 -1.1
4,129,749 + PFLU_RS18195 0.72 -0.5
4,129,750 - PFLU_RS18195 0.72 -0.9
4,129,750 - PFLU_RS18195 0.72 +0.2
4,129,750 - PFLU_RS18195 0.72 -0.6
4,129,812 + PFLU_RS18195 0.78 -1.1
4,129,812 + PFLU_RS18195 0.78 +0.4
4,129,813 - PFLU_RS18195 0.78 -0.4
4,129,813 - PFLU_RS18195 0.78 -1.2
4,130,016 + -1.1
4,130,017 - +0.8
4,130,182 - PFLU_RS18200 0.15 -1.6
4,130,182 - PFLU_RS18200 0.15 +1.6
4,130,182 - PFLU_RS18200 0.15 -0.8
4,130,276 + PFLU_RS18200 0.26 +0.2
4,130,276 + PFLU_RS18200 0.26 -1.8
4,130,373 + PFLU_RS18200 0.36 +1.2
4,130,373 + PFLU_RS18200 0.36 -0.0
4,130,373 + PFLU_RS18200 0.36 +1.7
4,130,374 - PFLU_RS18200 0.36 +0.5
4,130,565 + PFLU_RS18200 0.57 +0.6
4,130,565 + PFLU_RS18200 0.57 -0.7
4,130,565 + PFLU_RS18200 0.57 +0.4
4,130,565 + PFLU_RS18200 0.57 -1.4
4,130,566 - PFLU_RS18200 0.57 +0.6
4,130,566 - PFLU_RS18200 0.57 +1.2
4,130,566 - PFLU_RS18200 0.57 +1.9
4,130,566 - PFLU_RS18200 0.57 -0.3
4,130,566 - PFLU_RS18200 0.57 -0.5
4,130,566 - PFLU_RS18200 0.57 +0.9
4,130,566 - PFLU_RS18200 0.57 -0.8
4,130,566 - PFLU_RS18200 0.57 -0.2
4,130,598 + PFLU_RS18200 0.60 +1.2
4,130,599 - PFLU_RS18200 0.60 +0.1
4,130,643 + PFLU_RS18200 0.65 -2.0
4,130,643 + PFLU_RS18200 0.65 +0.8
4,130,643 + PFLU_RS18200 0.65 -0.7
4,130,643 + PFLU_RS18200 0.65 -0.5
4,130,644 - PFLU_RS18200 0.65 +0.0
4,130,644 - PFLU_RS18200 0.65 -0.8
4,130,644 - PFLU_RS18200 0.65 +0.7
4,130,649 + PFLU_RS18200 0.66 -1.1
4,130,649 + PFLU_RS18200 0.66 -0.4
4,130,649 + PFLU_RS18200 0.66 -0.3
4,130,650 - PFLU_RS18200 0.66 -1.5
4,130,650 - PFLU_RS18200 0.66 +0.1
4,130,650 - PFLU_RS18200 0.66 +0.4
4,130,650 - PFLU_RS18200 0.66 +0.2
4,130,650 - PFLU_RS18200 0.66 +1.0
4,130,650 - PFLU_RS18200 0.66 +0.3
4,130,650 - PFLU_RS18200 0.66 +3.2
4,130,652 + PFLU_RS18200 0.66 -0.5
4,130,652 + PFLU_RS18200 0.66 -0.7
4,130,652 + PFLU_RS18200 0.66 -0.4
4,130,652 + PFLU_RS18200 0.66 -0.6
4,130,652 + PFLU_RS18200 0.66 -0.1
4,130,652 + PFLU_RS18200 0.66 -0.0
4,130,653 - PFLU_RS18200 0.66 +0.1
4,130,653 - PFLU_RS18200 0.66 +1.9
4,130,653 - PFLU_RS18200 0.66 +0.4
4,130,653 - PFLU_RS18200 0.66 +0.2
4,130,653 - PFLU_RS18200 0.66 +0.7
4,130,653 - PFLU_RS18200 0.66 -0.5
4,130,653 - PFLU_RS18200 0.66 -1.4
4,130,961 + +0.6
4,130,961 + -0.9
4,130,961 + -1.0
4,130,961 + -2.2
4,130,962 - -1.4
4,130,962 - -0.4
4,130,962 - -0.0
4,130,962 - +1.2
4,130,962 - -0.2
4,131,039 - -1.8
4,131,039 - -1.4
4,131,114 + PFLU_RS18205 0.15 -0.9
4,131,114 + PFLU_RS18205 0.15 -0.4
4,131,114 + PFLU_RS18205 0.15 -0.1
4,131,115 - PFLU_RS18205 0.15 +0.9
4,131,115 - PFLU_RS18205 0.15 -0.6
4,131,115 - PFLU_RS18205 0.15 +0.6
4,131,115 - PFLU_RS18205 0.15 +0.7
4,131,115 - PFLU_RS18205 0.15 -0.2
4,131,115 - PFLU_RS18205 0.15 -0.8
4,131,148 + PFLU_RS18205 0.20 -1.4
4,131,148 + PFLU_RS18205 0.20 -0.1
4,131,148 + PFLU_RS18205 0.20 +0.6
4,131,169 + PFLU_RS18205 0.23 -0.4
4,131,170 - PFLU_RS18205 0.23 -1.5
4,131,170 - PFLU_RS18205 0.23 +0.2
4,131,278 + PFLU_RS18205 0.38 +0.2
4,131,279 - PFLU_RS18205 0.38 -0.5
4,131,378 - PFLU_RS18205 0.52 -0.4
4,131,411 + PFLU_RS18205 0.56 -0.1
4,131,411 + PFLU_RS18205 0.56 +0.2
4,131,412 - PFLU_RS18205 0.57 +1.6
4,131,412 - PFLU_RS18205 0.57 -1.6
4,131,412 - PFLU_RS18205 0.57 +2.3
4,131,412 - PFLU_RS18205 0.57 -0.1
4,131,459 + PFLU_RS18205 0.63 +0.1
4,131,459 + PFLU_RS18205 0.63 +2.0
4,131,459 + PFLU_RS18205 0.63 -1.4
4,131,460 - PFLU_RS18205 0.63 +1.6
4,131,460 - PFLU_RS18205 0.63 +1.2
4,131,541 + PFLU_RS18205 0.75 -1.8
4,131,555 + PFLU_RS18205 0.77 -1.6
4,131,556 - PFLU_RS18205 0.77 -0.8
4,131,796 + -2.5
4,131,796 + +0.9
4,131,797 - -0.6
4,131,797 - +3.2
4,131,797 - +0.6
4,131,797 - -0.8
4,131,803 + -1.8
4,131,803 + +1.9
4,131,803 + +0.4
4,131,804 - -1.0
4,131,804 - +0.3
4,131,804 - +0.2
4,131,810 + +0.8
4,131,821 + +0.6
4,131,821 + -1.0
4,131,821 + -1.4
4,131,821 + +0.6
4,131,821 + +0.8
4,131,822 - +0.2
4,131,822 - +0.5

Or see this region's nucleotide sequence