Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20475

Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20470 and BWI76_RS20475 are separated by 62 nucleotidesBWI76_RS20475 and BWI76_RS20480 are separated by 257 nucleotides BWI76_RS20470: BWI76_RS20470 - long-chain fatty acid transporter, at 4,285,088 to 4,286,452 _RS20470 BWI76_RS20475: BWI76_RS20475 - phospholipid-binding lipoprotein MlaA, at 4,286,515 to 4,287,276 _RS20475 BWI76_RS20480: BWI76_RS20480 - formate/nitrite transporter, at 4,287,534 to 4,288,430 _RS20480 Position (kb) 4286 4287 4288Strain fitness (log2 ratio) -2 -1 0 1at 4285.936 kb on - strand, within BWI76_RS20470at 4285.936 kb on - strand, within BWI76_RS20470at 4286.048 kb on + strand, within BWI76_RS20470at 4286.057 kb on + strand, within BWI76_RS20470at 4286.161 kb on - strand, within BWI76_RS20470at 4286.189 kb on - strand, within BWI76_RS20470at 4286.558 kb on + strandat 4286.807 kb on - strand, within BWI76_RS20475at 4287.003 kb on + strand, within BWI76_RS20475at 4287.101 kb on + strand, within BWI76_RS20475at 4287.126 kb on - strand, within BWI76_RS20475at 4287.163 kb on + strand, within BWI76_RS20475at 4287.474 kb on + strandat 4287.557 kb on - strandat 4287.646 kb on - strand, within BWI76_RS20480at 4287.713 kb on - strand, within BWI76_RS20480at 4287.715 kb on - strand, within BWI76_RS20480at 4287.853 kb on + strand, within BWI76_RS20480at 4288.041 kb on - strand, within BWI76_RS20480at 4288.213 kb on - strand, within BWI76_RS20480at 4288.216 kb on + strand, within BWI76_RS20480at 4288.254 kb on + strand, within BWI76_RS20480

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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4,285,936 - BWI76_RS20470 0.62 -0.2
4,285,936 - BWI76_RS20470 0.62 -0.0
4,286,048 + BWI76_RS20470 0.70 -0.1
4,286,057 + BWI76_RS20470 0.71 -0.1
4,286,161 - BWI76_RS20470 0.79 -0.2
4,286,189 - BWI76_RS20470 0.81 -0.1
4,286,558 + -0.2
4,286,807 - BWI76_RS20475 0.38 -0.2
4,287,003 + BWI76_RS20475 0.64 -1.1
4,287,101 + BWI76_RS20475 0.77 -0.0
4,287,126 - BWI76_RS20475 0.80 -1.1
4,287,163 + BWI76_RS20475 0.85 -1.2
4,287,474 + -0.7
4,287,557 - -0.7
4,287,646 - BWI76_RS20480 0.12 +0.0
4,287,713 - BWI76_RS20480 0.20 -0.9
4,287,715 - BWI76_RS20480 0.20 -0.2
4,287,853 + BWI76_RS20480 0.36 +0.6
4,288,041 - BWI76_RS20480 0.57 -1.8
4,288,213 - BWI76_RS20480 0.76 -0.8
4,288,216 + BWI76_RS20480 0.76 -0.3
4,288,254 + BWI76_RS20480 0.80 +0.1

Or see this region's nucleotide sequence